MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-188-P3

Family name MIR-188 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-188-P1  Cja-Mir-188-P2 
Orthologues Bta-Mir-188-P3  Cfa-Mir-188-P3  Cpo-Mir-188-P3  Dno-Mir-188-P3  Eca-Mir-188-P3  Ete-Mir-188-P3  Hsa-Mir-188-P3  Laf-Mir-188-P3  Mml-Mir-188-P3  Mmr-Mir-188-P3  Ocu-Mir-188-P3  Pab-Mir-188-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 48754892-48754950 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P3)		 Mir-188-P1 CM021937.1: 48744712-48744770 [+] UCSC Ensembl
Mir-188-P2 CM021937.1: 48745060-48745119 [+] UCSC Ensembl
Mir-362-P3a-v1 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P3a-v2 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P4 CM021937.1: 48750538-48750596 [+] UCSC Ensembl
Mir-362-P5 CM021937.1: 48751289-48751347 [+] UCSC Ensembl
Mir-188-P3 CM021937.1: 48754892-48754950 [+] UCSC Ensembl
Seed ACCCAUU
Precursor
(pre-Mir +30nt flank)		 
GUGCAGAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGAGCGCUGUCAUCGUGAAUCUUC
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Structure
        10          20        30         40        50         
GUGCAGAAGAAUGAACU--    C      CAUAC-|   U      C    U   GAAUU 
                   GCUC UUCUCC      CCAU GCAUAU GGAG UGU     \
                   CGAG GGGAGG      GGUA CGUGUG CCUC ACA     C
CUUCUAAGUGCUACUGUCG    U      ACAUUA^   -      U    C   AAACU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-188-P3_5p
mirBase accessionNone
Sequence 
0- UACCCAUUGCAUAUCGGAGUUGU -23
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Star sequence

Cja-Mir-188-P3_3p* (predicted)
mirBase accessionNone
Sequence 
36- ACCUCCUGUGUGCAUGGAUUACA -59
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