Mir-188-P3

MirGeneDB ID

Mml-Mir-188-P3

Family name

MIR-188 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-660

Paralogues

Mml-Mir-188-P1 Mml-Mir-188-P2

Orthologues

Bta-Mir-188-P3 Cfa-Mir-188-P3 Cja-Mir-188-P3 Cpo-Mir-188-P3 Dno-Mir-188-P3 Eca-Mir-188-P3 Ete-Mir-188-P3 Hsa-Mir-188-P3 Laf-Mir-188-P3 Mmr-Mir-188-P3 Ocu-Mir-188-P3 Pab-Mir-188-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 49803687-49803745 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P3)

Mir-188-P1 CM014356.1: 49792095-49792153 [+] UCSC Ensembl
Mir-188-P2 CM014356.1: 49792448-49792507 [+] UCSC Ensembl
Mir-362-P3a-v1 CM014356.1: 49797348-49797409 [+] UCSC Ensembl
Mir-362-P3a-v2 CM014356.1: 49797348-49797409 [+] UCSC Ensembl
Mir-362-P4 CM014356.1: 49797871-49797929 [+] UCSC Ensembl
Mir-362-P3b CM014356.1: 49801117-49801177 [+] UCSC Ensembl
Mir-188-P3 CM014356.1: 49803687-49803745 [+] UCSC Ensembl
Mir-362-P6 CM014356.1: 49805039-49805098 [+] UCSC Ensembl

Seed

ACCCAUU

Precursor
(pre-Mir +30nt flank)

GUGCAGAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUAAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGAGCCUUGUCAUCGUGAAUCUUC

Get precursor sequence

Structure

        10          20        30         40        50         
GUGCAGAAGAAUGAACU--    C      CAUAC-|   U      C    U   AAAUU 
                   GCUC UUCUCC      CCAU GCAUAU GGAG UGU     \
                   CGAG GGGAGG      GGUA CGUGUG CCUC ACA     C
CUUCUAAGUGCUACUGUUC    U      ACAUUA^   -      U    C   AAACU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-188-P3_5p

mirBase accession

MIMAT0006499

Sequence

0- UACCCAUUGCAUAUCGGAGUUGU -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-660-5p

Star sequence

Mml-Mir-188-P3_3p*

mirBase accession

MIMAT0026907

Sequence

36- ACCUCCUGUGUGCAUGGAUUACA -59

Get sequence

Proposed targets

TargetScanVert: mml-miR-660-3p