Mir-188-P3

MirGeneDB ID

Hsa-Mir-188-P3

Family name

MIR-188 (all species)

Seed

ACCCAUU

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-660

Paralogues

Hsa-Mir-188-P1 Hsa-Mir-188-P2

Orthologues

Bta-Mir-188-P3 Cfa-Mir-188-P3 Cpo-Mir-188-P3 Dno-Mir-188-P3 Ete-Mir-188-P3 Mml-Mir-188-P3 Ocu-Mir-188-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 50013256-50013314 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P3)

Mir-188-P2 chrX: 50003167-50003225 [+] UCSC Ensembl
Mir-188-P1 chrX: 50003517-50003576 [+] UCSC Ensembl
Mir-362-P2-v1 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P2-v2 chrX: 50008443-50008504 [+] UCSC Ensembl
Mir-362-P1 chrX: 50008968-50009026 [+] UCSC Ensembl
Mir-362-P3 chrX: 50009735-50009794 [+] UCSC Ensembl
Mir-362-P5 chrX: 50010681-50010742 [+] UCSC Ensembl
Mir-188-P3 chrX: 50013256-50013314 [+] UCSC Ensembl
Mir-362-P4 chrX: 50014612-50014671 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCAGAAGAAUGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGGUGAGCCUUGUCAUCGUGAAUCUUC

Get precursor sequence

Structure

        10          20        30         40        50         
GUGCAGAAGAAUGAACU--    C      CAUAC-|   U      C    U   GAAUU 
                   GCUC UUCUCC      CCAU GCAUAU GGAG UGU     \
                   CGAG GGGAGG      GGUA CGUGUG CCUC ACA     C
CUUCUAAGUGCUACUGUUC    U      ACAUUA^   -      U    C   AAACU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-188-P3_5p

mirBase accession

MIMAT0003338

Sequence

0- UACCCAUUGCAUAUCGGAGUUGU -23

Get sequence

Proposed targets

microrna.org: MIMAT0003338
TargetScanVert: hsa-miR-660-5p
TargetMiner: hsa-miR-660-5p
miRDB: MIMAT0003338

Star sequence

Hsa-Mir-188-P3_3p*

mirBase accession

MIMAT0022711

Sequence

36- ACCUCCUGUGUGCAUGGAUUACA -59

Get sequence

Proposed targets

TargetScanVert: hsa-miR-660-3p
TargetMiner: hsa-miR-660-3p
miRDB: MIMAT0022711