MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-188-P3

Family name MIR-188 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-188-P1  Laf-Mir-188-P2 
Orthologues Bta-Mir-188-P3  Cfa-Mir-188-P3  Cja-Mir-188-P3  Cpo-Mir-188-P3  Dno-Mir-188-P3  Eca-Mir-188-P3  Ete-Mir-188-P3  Hsa-Mir-188-P3  Mml-Mir-188-P3  Mmr-Mir-188-P3  Ocu-Mir-188-P3  Pab-Mir-188-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010083.1: 317651-317709 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P3)		 Mir-362-P6 GL010083.1: 316274-316333 [-] UCSC Ensembl
Mir-188-P3 GL010083.1: 317651-317709 [-] UCSC Ensembl
Mir-362-P4 GL010083.1: 323100-323158 [-] UCSC Ensembl
Mir-362-P2 GL010083.1: 348733-348792 [-] UCSC Ensembl
Mir-362-P1 GL010083.1: 349059-349115 [-] UCSC Ensembl
Mir-188-P1 GL010083.1: 353164-353224 [-] UCSC Ensembl
Mir-188-P2 GL010083.1: 353531-353589 [-] UCSC Ensembl
Seed ACCCAUU
Precursor
(pre-Mir +30nt flank)		 
GUGCAGAAGAACGAACUGCUCCUUCUCCCAUACCCAUUGCAUAUCGGAGUUGUGAUUUCUCAAAACACCUCCUGUGUGCAUGGAUUACAGGAGGACGAGCCUUGACGUCGUGAACCUUC
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Structure
        10          20        30         40        50         
GUGCAGAAGAACGAACU--    C      CAUAC-|   U      C    U   GAUUU 
                   GCUC UUCUCC      CCAU GCAUAU GGAG UGU     \
                   CGAG AGGAGG      GGUA CGUGUG CCUC ACA     C
CUUCCAAGUGCUGCAGUUC    C      ACAUUA^   -      U    C   AAACU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Wh
Mature sequence

Laf-Mir-188-P3_5p
mirBase accessionNone
Sequence 
0- UACCCAUUGCAUAUCGGAGUUGU -23
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Star sequence

Laf-Mir-188-P3_3p*
mirBase accessionNone
Sequence 
36- ACCUCCUGUGUGCAUGGAUUACA -59
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