MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-188-P2

Family name MIR-188 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-188-P1  Laf-Mir-188-P3 
Orthologues Bta-Mir-188-P2  Cfa-Mir-188-P2  Cja-Mir-188-P2  Cpo-Mir-188-P2  Dno-Mir-188-P2  Eca-Mir-188-P2  Hsa-Mir-188-P2  Mml-Mir-188-P2  Mmr-Mir-188-P2  Mmu-Mir-188-P2  Ocu-Mir-188-P2  Pab-Mir-188-P2  Rno-Mir-188-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010083.1: 353531-353589 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P2)		 Mir-362-P6 GL010083.1: 316274-316333 [-] UCSC Ensembl
Mir-188-P3 GL010083.1: 317651-317709 [-] UCSC Ensembl
Mir-362-P4 GL010083.1: 323100-323158 [-] UCSC Ensembl
Mir-362-P2 GL010083.1: 348733-348792 [-] UCSC Ensembl
Mir-362-P1 GL010083.1: 349059-349115 [-] UCSC Ensembl
Mir-188-P1 GL010083.1: 353164-353224 [-] UCSC Ensembl
Mir-188-P2 GL010083.1: 353531-353589 [-] UCSC Ensembl
Seed AUGCCUU
Precursor
(pre-Mir +30nt flank)		 
AGUGAAUCUCAUGACUUGUUUUUUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGUAUAUUAAUUAUCCUCCCACACCCAAGGCUUGCAGGAGAGAGAGCCUCCUCUUUCCUCUCCAGU
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Structure
        10          20        30        40        50         
AGUGAAUCUCAUGACUU--|           A  U      A    A   CCGUUGGUAU 
                   GUUUUUUCUCUU CA GCCUUG GUGU GGA          \
                   CGAGAGAGAGGA GU CGGAAC CACA CCU          A
UGACCUCUCCUUUCUCCUC^           C  U      C    C   CCUAUUAAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
Wh
Mature sequence

Laf-Mir-188-P2_5p
mirBase accessionNone
Sequence 
0- CAUGCCUUGAGUGUAGGACCGU -22
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Star sequence

Laf-Mir-188-P2_3p*
mirBase accessionNone
Sequence 
37- CCUCCCACACCCAAGGCUUGCA -59
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