MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-188-P2

Family name MIR-188 (all species)
Seed AUGCCUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-532
Paralogues Cpo-Mir-188-P1  Cpo-Mir-188-P3 
Orthologues Bta-Mir-188-P2  Cfa-Mir-188-P2  Dno-Mir-188-P2  Hsa-Mir-188-P2  Mml-Mir-188-P2  Mmu-Mir-188-P2  Ocu-Mir-188-P2  Rno-Mir-188-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_132: 3003104-3003162 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-188-P2)
Mir-188-P2 scaffold_132: 3003104-3003162 [+] UCSC
Mir-188-P1 scaffold_132: 3003465-3003524 [+] UCSC
Mir-362-P1 scaffold_132: 3009085-3009144 [+] UCSC
Mir-362-P3 scaffold_132: 3009773-3009832 [+] UCSC
Mir-362-P5 scaffold_132: 3010278-3010339 [+] UCSC
Mir-188-P3 scaffold_132: 3012570-3012628 [+] UCSC
Mir-362-P4 scaffold_132: 3014248-3014306 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGUGAACCCCCACACUUGCUUUCUCUCUUCCAUGCCUUGAGUGUAGGACCGUUGGCGUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGUGAGCCUUCUCUUCUUCUCCUGUG
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Structure
        10          20        30        40        50         
AGUGAACCCCCACACUU--|   U       C  U      A    A   CC  UGGCGU 
                   GCUU CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGAG GGGAGGA GU CGGAAC CACA CCU  CA      C
GUGUCCUCUUCUUCUCUUC^   U       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-188-P2_5p

mirBase accessionMIMAT0047335
Sequence
0- CAUGCCUUGAGUGUAGGACCGU -22
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Star sequence

Cpo-Mir-188-P2_3p*

mirBase accessionMIMAT0047336
Sequence
37- CCUCCCACACCCAAGGCUUGCA -59
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