MirGeneDB 3.0
MirGeneDB ID

Dno-Mir-188-P2

Family name MIR-188 (all species)
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-188
Paralogues Dno-Mir-188-P1  Dno-Mir-188-P3 
Orthologues Bta-Mir-188-P2  Cfa-Mir-188-P2  Cja-Mir-188-P2  Cpo-Mir-188-P2  Eca-Mir-188-P2  Hsa-Mir-188-P2  Laf-Mir-188-P2  Mml-Mir-188-P2  Mmr-Mir-188-P2  Mmu-Mir-188-P2  Ocu-Mir-188-P2  Pab-Mir-188-P2  Rno-Mir-188-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)		 JH569306: 1545145-1545204 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P2)		 Mir-188-P1 JH569306: 1544821-1544879 [+] UCSC Ensembl
Mir-188-P2 JH569306: 1545145-1545204 [+] UCSC Ensembl
Mir-362-P3a-v1 JH569306: 1548488-1548549 [+] UCSC Ensembl
Mir-362-P3a-v2 JH569306: 1548489-1548548 [+] UCSC Ensembl
Mir-362-P4 JH569306: 1549504-1549562 [+] UCSC Ensembl
Mir-362-P3b JH569306: 1550649-1550711 [+] UCSC Ensembl
Mir-188-P3 JH569306: 1554037-1554096 [+] UCSC Ensembl
Mir-362-P6 JH569306: 1556109-1556168 [+] UCSC Ensembl
Seed AUCCCUU
Precursor
(pre-Mir +30nt flank)		 
GAGUGAGACUUUCCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCAGGAAACCCCUCCCACGUGCAGGGUUUGCAGGAUGGUGAGCCUCAGCUUUCCUUGCUCUC
Get precursor sequence
Structure
        10          20         30        40        50         
GAGUGAGACUUUCCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUGC  CCUCCC       C
CUCUCGUUCCUUUCGACUC    U^ U-   AC  UU         AC      CAAAGGA 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut is consistently +3 across mammals.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Dno-Mir-188-P2_5p
mirBase accessionMIMAT0047711
Sequence 
0- CAUCCCUUGCAUGGUGGAGGGU -22
Get sequence
Star sequence

Dno-Mir-188-P2_3p*
mirBase accessionMIMAT0047712
Sequence 
39- CUCCCACGUGCAGGGUUUGCA -60
Get sequence