MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-188-P1

Family name MIR-188 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-188-P2  Laf-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cja-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Eca-Mir-188-P1  Hsa-Mir-188-P1  Mml-Mir-188-P1  Mmr-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Pab-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010083.1: 353164-353224 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-362-P6 GL010083.1: 316274-316333 [-] UCSC Ensembl
Mir-188-P3 GL010083.1: 317651-317709 [-] UCSC Ensembl
Mir-362-P4 GL010083.1: 323100-323158 [-] UCSC Ensembl
Mir-362-P2 GL010083.1: 348733-348792 [-] UCSC Ensembl
Mir-362-P1 GL010083.1: 349059-349115 [-] UCSC Ensembl
Mir-188-P1 GL010083.1: 353164-353224 [-] UCSC Ensembl
Mir-188-P2 GL010083.1: 353531-353589 [-] UCSC Ensembl
Seed AUCCCUU
Precursor
(pre-Mir +30nt flank)		 
AGAGUGAGCCUCUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAAACUUUCUGGAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUAAGCUUUCCUUGCUCUC
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Structure
        10          20         30        40        50          
AGAGUGAGCCUCUCCCU--    -| UC   CA  UC         GU      UGAAACUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG        \
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC        U
CUCUCGUUCCUUUCGAAUC    U^ U-   AC  UU         AC      CAAAGGUC 
 .       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
Wh
Mature sequence

Laf-Mir-188-P1_5p
mirBase accessionNone
Sequence 
0- CAUCCCUUGCAUGGUGGAGGGU -22
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Star sequence

Laf-Mir-188-P1_3p*
mirBase accessionNone
Sequence 
39- CCUCCCACAUGCAGGGUUUGCA -61
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