Mir-188-P1

MirGeneDB ID

Eca-Mir-188-P1

Family name

MIR-188 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-532

Paralogues

Eca-Mir-188-P2 Eca-Mir-188-P3

Orthologues

Bta-Mir-188-P1 Cfa-Mir-188-P1 Cja-Mir-188-P1 Cpo-Mir-188-P1 Dno-Mir-188-P1 Hsa-Mir-188-P1 Laf-Mir-188-P1 Mml-Mir-188-P1 Mmr-Mir-188-P1 Mmu-Mir-188-P1 Ocu-Mir-188-P1 Pab-Mir-188-P1 Rno-Mir-188-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41473395-41473453 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P1)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Seed

AUGCCUU

Precursor
(pre-Mir +30nt flank)

AGCAAACCUUCUGAUUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGGGCAAGCCUUUUCCUUCCUCUCCAGU

Get precursor sequence

Structure

        10          20        30        40        50         
AGCAAACCUUCUGAUUU--|   U       A  U      A    A   CC  UGGCAU 
                   GCUU CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGAA GGGAGGA GU CGGAAC CACA CCU  CA      C
UGACCUCUCCUUCCUUUUC^   C       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-188-P1_5p

mirBase accession

MIMAT0013235

Sequence

0- CAUGCCUUGAGUGUAGGACCGU -22

Get sequence

Star sequence

Eca-Mir-188-P1_3p*

mirBase accession

MIMAT0013236

Sequence

37- CCUCCCACACCCAAGGCUUGCA -59

Get sequence