Mir-362-P5

MirGeneDB ID

Eca-Mir-362-P5

Family name

MIR-362 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-501

Paralogues

Eca-Mir-362-P3a-v1 Eca-Mir-362-P3b-v1 Eca-Mir-362-P4 Eca-Mir-362-P6

Orthologues

Cja-Mir-362-P5 Cpo-Mir-362-P5 Hsa-Mir-362-P5 Mml-Mir-362-P5 Mmr-Mir-362-P5 Mmu-Mir-362-P5 Ocu-Mir-362-P5 Pab-Mir-362-P5 Rno-Mir-362-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41479494-41479552 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P5)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Seed

AUGCACC

Precursor
(pre-Mir +30nt flank)

CCCGAGUUUUCUAUUCUGCUCUCCCUCUCUCAUCCUUCGUCCCUGGGUGAGAGUGCUUUCCGAAUGCAAUGCACCUGGGCAAGGAUUCCAGAGGGCGAGGCUCCUCUGCGUGGAGAAGG

Get precursor sequence

Structure

        10          20        30        40        50        60 
CCCGAGUUUUCUAUUCUG--|  U      CUC      C    CU     AGAG   UUUC 
                    CUC CCCUCU   AUCCUU GUCC  GGGUG    UGC    \
                    GAG GGGAGA   UAGGAA CGGG  UCCAC    ACG    C
GGAAGAGGUGCGUCUCCUCG^  C      CCU      -    --     GUA-   UAAG 
       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-362-P5_5p*

mirBase accession

MIMAT0013224

Sequence

0- CAUCCUUCGUCCCUGGGUGAGAGUGC -26

Get sequence

Mature sequence

Eca-Mir-362-P5_3p

mirBase accession

None

Sequence

37- AAUGCACCUGGGCAAGGAUUCC -59

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