MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-362-P3a

Family name MIR-362 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-500-1
Paralogues Eca-Mir-362-P3b-v1  Eca-Mir-362-P4  Eca-Mir-362-P5  Eca-Mir-362-P6 
Orthologues Bta-Mir-362-P3a-v1  Cfa-Mir-362-P3a-v1  Cja-Mir-362-P3a-v1  Dno-Mir-362-P3a-v1  Hsa-Mir-362-P3a-v1  Mml-Mir-362-P3a-v1  Mmr-Mir-362-P3a-v1  Ocu-Mir-362-P3a  Pab-Mir-362-P3a-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P3a-v1)		 Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl
Variant

Eca-Mir-362-P3a-v1
Seed AUGCACC
Precursor
(pre-Mir +30nt flank)		 
UGCAGGGCCUUCUGCUCUGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGUUGUCUGAAUGCAAUGCACCUGGGCAAGGAUUCCGAGAGCGAGAGCUUCAUCUUCAUUUAGGACAG
Get precursor sequence
Structure
        10          20        30         40        50         60 
UGCAGGGCCUUCUGCUCU--    CCC     U-|        UAC UG    AGA-  GUUGU 
                    GCUC   CUCUC  AAUCCUUGC   C  GGUG    GU     \
                    CGAG   GAGAG  UUAGGAACG   G  CCAC    CG     C
GACAGGAUUUACUUCUACUU    AGC     CC^        --- GU    GUAA  UAAGU 
120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-362-P3a-v1_5p*
mirBase accessionMIMAT0013223
Sequence 
0- UAAUCCUUGCUACCUGGGUGAGAGU -25
Get sequence
Mature sequence

Eca-Mir-362-P3a-v1_3p
mirBase accessionNone
Sequence 
38- AAUGCACCUGGGCAAGGAUUCCGA -62
Get sequence
Variant

Eca-Mir-362-P3a-v2
Seed UGCACCU
Precursor
(pre-Mir +30nt flank)		 
UGCAGGGCCUUCUGCUCUGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGUUGUCUGAAUGCAAUGCACCUGGGCAAGGAUUCCGAGAGCGAGAGCUUCAUCUUCAUUUAGGACAG
Get precursor sequence
Structure
        10          20        30         40        50        60 
UGCAGGGCCUUCUGCUCU--    CCC     U-|        UAC UG    AGAGUGUUGU 
                    GCUC   CUCUC  AAUCCUUGC   C  GGUG          C
                    CGAG   GAGAG  UUAGGAACG   G  CCAC          U
GACAGGAUUUACUUCUACUU    AGC     CC^        --- GU    GUAACGUAAG 
120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-362-P3a-v2_5p*
mirBase accessionMIMAT0013223
Sequence 
0- UAAUCCUUGCUACCUGGGUGAGAG -24
Get sequence
Mature sequence

Eca-Mir-362-P3a-v2_3p
mirBase accessionNone
Sequence 
39- AUGCACCUGGGCAAGGAUUCCGA -62
Get sequence