MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-362-P3a

Family name MIR-362 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-500
Paralogues Cfa-Mir-362-P3b  Cfa-Mir-362-P4  Cfa-Mir-362-P6 
Orthologues Bta-Mir-362-P3a-v1  Cja-Mir-362-P3a-v1  Dno-Mir-362-P3a-v1  Eca-Mir-362-P3a-v1  Hsa-Mir-362-P3a-v1  Mml-Mir-362-P3a-v1  Mmr-Mir-362-P3a-v1  Ocu-Mir-362-P3a  Pab-Mir-362-P3a-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 42779871-42779932 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P3a-v1)		 Mir-188-P1 chrX: 42774680-42774738 [+] UCSC Ensembl
Mir-188-P2 chrX: 42775072-42775131 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 42779871-42779932 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 42779872-42779931 [+] UCSC Ensembl
Mir-362-P4 chrX: 42780369-42780427 [+] UCSC Ensembl
Mir-362-P3b chrX: 42781869-42781930 [+] UCSC Ensembl
Mir-188-P3 chrX: 42783965-42784023 [+] UCSC Ensembl
Mir-362-P6 chrX: 42785601-42785660 [+] UCSC Ensembl
Variant

Cfa-Mir-362-P3a-v1
Seed AAUCCUU
Precursor
(pre-Mir +30nt flank)		 
UGUGGGGCCUCCUGAUCUGUUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUUUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGUGAGAGCUUCAUCUUCACGUAAGGACA
Get precursor sequence
Structure
        10          20        30         40        50        60 
UGUGGGGCCUCCUGAUCU--    CCC     U-|        UAC UG    AGAGUGCUUU 
                    GUUC   CUCUC  AAUCCUUGC   C  GGUG          C
                    CGAG   GAGAG  UUAGGAACG   G  CCAC          U
ACAGGAAUGCACUUCUACUU    AGU     UC^        --- GU    GUAACGUAAG 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-362-P3a-v1_5p
mirBase accessionNone
Sequence 
0- UAAUCCUUGCUACCUGGGUGAGAG -24
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Co-mature sequence

Cfa-Mir-362-P3a-v1_3p
mirBase accessionMIMAT0006759
Sequence 
39- AUGCACCUGGGCAAGGAUUCUGA -62
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Proposed targets TargetScanVert: cfa-miR-500
miRDB: MIMAT0006759
Variant

Cfa-Mir-362-P3a-v2
Seed AUGCACC
Precursor
(pre-Mir +30nt flank)		 
GUGGGGCCUCCUGAUCUGUUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUUUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGUGAGAGCUUCAUCUUCACGUAAGGAC
Get precursor sequence
Structure
        10          20        30         40        50           
GUGGGGCCUCCUGAUCU--    CCC     U-|        UAC UG    AGA-  GCUUU 
                   GUUC   CUCUC  AAUCCUUGC   C  GGUG    GU     \
                   CGAG   GAGAG  UUAGGAACG   G  CCAC    CG     C
CAGGAAUGCACUUCUACUU    AGU     UC^        --- GU    GUAA  UAAGU 
.       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-362-P3a-v2_5p*
mirBase accessionNone
Sequence 
0- AAUCCUUGCUACCUGGGUGAGAGU -24
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Mature sequence

Cfa-Mir-362-P3a-v2_3p
mirBase accessionMIMAT0006759
Sequence 
37- AAUGCACCUGGGCAAGGAUUCUG -60
Get sequence
Proposed targets TargetScanVert: cfa-miR-500
miRDB: MIMAT0006759