Mir-362-P6

MirGeneDB ID

Cfa-Mir-362-P6

Family name

MIR-362 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-502

Paralogues

Cfa-Mir-362-P3a-v1 Cfa-Mir-362-P3b Cfa-Mir-362-P4

Orthologues

Bta-Mir-362-P6 Cpo-Mir-362-P6 Dno-Mir-362-P6 Eca-Mir-362-P6 Ete-Mir-362-P6 Hsa-Mir-362-P6 Laf-Mir-362-P6 Mml-Mir-362-P6 Mmr-Mir-362-P6 Mmu-Mir-362-P6 Ocu-Mir-362-P6 Pab-Mir-362-P6 Rno-Mir-362-P6

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chrX: 42785601-42785660 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P6)

Mir-188-P1 chrX: 42774680-42774738 [+] UCSC Ensembl
Mir-188-P2 chrX: 42775072-42775131 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 42779871-42779932 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 42779872-42779931 [+] UCSC Ensembl
Mir-362-P4 chrX: 42780369-42780427 [+] UCSC Ensembl
Mir-362-P3b chrX: 42781869-42781930 [+] UCSC Ensembl
Mir-188-P3 chrX: 42783965-42784023 [+] UCSC Ensembl
Mir-362-P6 chrX: 42785601-42785660 [+] UCSC Ensembl

Seed

AUGCACC

Precursor
(pre-Mir +30nt flank)

CUUCAGCUUUCCGCGCUGCUCCCCCUCUCUAAUCCUUGCUAUCUGGGUGCUAGUGCUGUCUCAAUGCAAUGCACCUGGGCAAGGAUUCAGAGAGGGUGGGCUCAACUGCAUCAAGAAGAA

Get precursor sequence

Structure

        10          20        30         40        50        60 
CUUCAGCUUUCCGCGCU--    C        -|        UAU UG     UAG   UGUC 
                   GCUC CCCUCUCU AAUCCUUGC   C  GGUGC   UGC    \
                   CGGG GGGAGAGA UUAGGAACG   G  CCACG   ACG    U
AAGAAGAACUACGUCAACU    U        C^        --- GU     UA-   UAAC 
.       110       100        90        80           70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-362-P6_5p*

mirBase accession

None

Sequence

0- AAUCCUUGCUAUCUGGGUGCUAGUGC -26

Get sequence

Mature sequence

Cfa-Mir-362-P6_3p

mirBase accession

MIMAT0006761

Sequence

37- AAUGCACCUGGGCAAGGAUUCAG -60

Get sequence

Proposed targets

TargetScanVert: cfa-miR-502
miRDB: MIMAT0006761