Mir-362-P6

MirGeneDB ID

Bta-Mir-362-P6

Family name

MIR-362 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-502a-1

Paralogues

Bta-Mir-362-P1-v1 Bta-Mir-362-P3a-v1 Bta-Mir-362-P3b-v1 Bta-Mir-362-P4

Orthologues

Cfa-Mir-362-P6 Cpo-Mir-362-P6 Dno-Mir-362-P6 Eca-Mir-362-P6 Ete-Mir-362-P6 Hsa-Mir-362-P6 Laf-Mir-362-P6 Mml-Mir-362-P6 Mmr-Mir-362-P6 Mmu-Mir-362-P6 Ocu-Mir-362-P6 Pab-Mir-362-P6 Rno-Mir-362-P6

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87742037-87742096 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P6)

Mir-188-P1 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P2 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P1-v1 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P1-v2 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P3a-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P3b-v1 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-362-P3b-v2 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87742037-87742096 [+] UCSC Ensembl

Seed

AUGCACC

Precursor
(pre-Mir +30nt flank)

GCUUGAGCCAUCUGCCCUGCCCACCCCUCUAAUCCUUGCUCUCUGGGUGCUAGUGCUGUCUCCAUGCAAUGCACCUGGGCAAGGAUUCAGAGAGGGUGGGCUGAACUGCACCAAGGACAG

Get precursor sequence

Structure

        10         20         30         40        50        60 
GCUUGAGCCAUCUGCCCU-        -    -|          UCU      UAG   UGUC 
                   GCCCACCC CUCU AAUCCUUGCUC   GGGUGC   UGC    \
                   CGGGUGGG GAGA UUAGGAACGGG   UCCACG   ACG    U
GACAGGAACCACGUCAAGU        A    C^          ---      UA-   UACC 
.       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-362-P6_5p* (predicted)

mirBase accession

None

Sequence

0- AAUCCUUGCUCUCUGGGUGCUAGUGC -26

Get sequence

Mature sequence

Bta-Mir-362-P6_3p

mirBase accession

MIMAT0009338

Sequence

37- AAUGCACCUGGGCAAGGAUUCAG -60

Get sequence

Proposed targets

TargetScanVert: bta-miR-502a