Mir-362-P3b-v2

MirGeneDB ID

Bta-Mir-362-P3b

Family name

MIR-362 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-500

Paralogues

Bta-Mir-362-P1-v1 Bta-Mir-362-P3a-v1 Bta-Mir-362-P3b-v1 Bta-Mir-362-P4 Bta-Mir-362-P6

Orthologues

Cfa-Mir-362-P3b Cpo-Mir-362-P3b Dno-Mir-362-P3b Eca-Mir-362-P3b-v1 Hsa-Mir-362-P3b Mml-Mir-362-P3b Mmr-Mir-362-P3b-v1 Pab-Mir-362-P3b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87737938-87737999 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P3b-v2)

Mir-188-P1 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P2 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P1-v1 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P1-v2 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P3a-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P3b-v1 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-362-P3b-v2 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87742037-87742096 [+] UCSC Ensembl

Variant

Bta-Mir-362-P3b-v2

Seed

UGCACCU

Precursor
(pre-Mir +30nt flank)

CUGGAAUCUUCUGUCCUGGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUUUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGAGGGAGCACCAUCUUCGCCUAGAACAA

Get precursor sequence

Structure

        10          20        30         40        50         60 
CUGGAAUCUUCUGUCCUG--      C     U-|        UAC UG    AGA-  GCUUU 
                    GCUCCC CUCUC  AAUCCUUGC   C  GGUG    GU     \
                    CGAGGG GAGAG  UUAGGAACG   G  CCAC    CG     C
AACAAGAUCCGCUUCUACCA      A     UC^        --- GU    GUAA  UAAGU 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-362-P3b-v2_5p*

mirBase accession

MIMAT0009337

Sequence

0- UAAUCCUUGCUACCUGGGUGAGAGU -25

Get sequence

Proposed targets

TargetScanVert: bta-miR-500

Mature sequence

Bta-Mir-362-P3b-v2_3p

mirBase accession

None

Sequence

39- AUGCACCUGGGCAAGGAUUCUGA -62

Get sequence

Variant

Bta-Mir-362-P3b-v1

Seed

AUGCACC

Precursor
(pre-Mir +30nt flank)

CUGGAAUCUUCUGUCCUGGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUUUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGAGGGAGCACCAUCUUCGCCUAGAACAA

Get precursor sequence

Structure

        10          20        30         40        50        60  
CUGGAAUCUUCUGUCCUG--      C     U-|        UAC UG    AGAG  CUUUC 
                    GCUCCC CUCUC  AAUCCUUGC   C  GGUG    UG     \
                    CGAGGG GAGAG  UUAGGAACG   G  CCAC    AC     U
AACAAGAUCCGCUUCUACCA      A     UC^        --- GU    GUA-  GUAAG 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-362-P3b-v1_5p*

mirBase accession

MIMAT0009337

Sequence

0- UAAUCCUUGCUACCUGGGUGAGAGUG -26

Get sequence

Proposed targets

TargetScanVert: bta-miR-500

Mature sequence

Bta-Mir-362-P3b-v1_3p

mirBase accession

None

Sequence

38- AAUGCACCUGGGCAAGGAUUCUGA -62

Get sequence