Mir-362-P3b

MirGeneDB ID

Pab-Mir-362-P3b

Family name

MIR-362 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-362-P3a-v1 Pab-Mir-362-P4 Pab-Mir-362-P5 Pab-Mir-362-P6

Orthologues

Bta-Mir-362-P3b-v1 Cfa-Mir-362-P3b Cpo-Mir-362-P3b Dno-Mir-362-P3b Eca-Mir-362-P3b-v1 Hsa-Mir-362-P3b Mml-Mir-362-P3b Mmr-Mir-362-P3b-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054702.2: 50287048-50287109 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P3b)

Mir-188-P1 CM054702.2: 50279557-50279615 [+] UCSC Ensembl
Mir-188-P2 CM054702.2: 50279907-50279966 [+] UCSC Ensembl
Mir-362-P3a-v1 CM054702.2: 50284816-50284877 [+] UCSC Ensembl
Mir-362-P3a-v2 CM054702.2: 50284816-50284877 [+] UCSC Ensembl
Mir-362-P4 CM054702.2: 50285340-50285398 [+] UCSC Ensembl
Mir-362-P5 CM054702.2: 50286109-50286167 [+] UCSC Ensembl
Mir-362-P3b CM054702.2: 50287048-50287109 [+] UCSC Ensembl
Mir-188-P3 CM054702.2: 50289638-50289696 [+] UCSC Ensembl
Mir-362-P6 CM054702.2: 50290996-50291055 [+] UCSC Ensembl

Seed

AAUCCUU

Precursor
(pre-Mir +30nt flank)

CUGGAAUCUUCUGUCCUGGUUCCCCCUCUCUAAUCCUUGCUACCUGUGUGAGAGUGCUUUCUGAAUGCAGUGCACCCAGGCAAGGAUUCUGCAAGGGGGAGUGACAUCUUCGCAUAGGACAG

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Structure

        10          20        30         40        50        60 
CUGGAAUCUUCUGUCCUGG--        CUCU-|         ACCU     AGA  GCUUU 
                     UUCCCCCU     AAUCCUUGCU    GUGUG   GU     \
                     GAGGGGGA     UUAGGAACGG    CACGU   CG     C
GACAGGAUACGCUUCUACAGU        ACGUC^         ACC-     GA-  UAAGU 
120       110       100        90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-362-P3b_5p (predicted)

mirBase accession

None

Sequence

0- UAAUCCUUGCUACCUGUGUGAGAGU -25

Get sequence

Star sequence

Pab-Mir-362-P3b_3p* (predicted)

mirBase accession

None

Sequence

38- AGUGCACCCAGGCAAGGAUUCUGC -62

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