MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-362-P3a

Family name MIR-362 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-502b
Paralogues Bta-Mir-362-P1-v1  Bta-Mir-362-P3a-v1  Bta-Mir-362-P3b-v1  Bta-Mir-362-P4  Bta-Mir-362-P6 
Orthologues Cfa-Mir-362-P3a-v1  Cja-Mir-362-P3a-v1  Dno-Mir-362-P3a-v1  Eca-Mir-362-P3a-v1  Hsa-Mir-362-P3a-v1  Mml-Mir-362-P3a-v1  Mmr-Mir-362-P3a-v1  Ocu-Mir-362-P3a  Pab-Mir-362-P3a-v1 
Node of Origin (locus) B. taurus
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P3a-v3)		 Mir-188-P1 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P2 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P1-v1 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P1-v2 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P3a-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P3b-v1 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-362-P3b-v2 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87742037-87742096 [+] UCSC Ensembl
Variant

Bta-Mir-362-P3a-v3
Seed CCACCUG
Precursor
(pre-Mir +30nt flank)		 
CGUGGGACCGUCUGUUGUGGCUCCCCUCUCUAAUUCUUGCUCCCCAGGUGAGAGUGCUUUGUGAAUGCAAUCCACCUGGGCAAGGAUUCUGAAUGUGAGAGCUCCCAUCUUCCAUAUGGGAC
Get precursor sequence
Structure
        10         20         30         40        50        60  
CGUGGGACCGUCUGUUGU-     CCCUC-  U-|        UCC       A  GUGCUUUG 
                   GGCUC      UC  AAUUCUUGC   CCAGGUG GA        \
                   UCGAG      AG  UUAGGAACG   GGUCCAC CU        U
CAGGGUAUACCUUCUACCC     AGUGUA  UC^        ---       -  AACGUAAG 
120       110       100        90        80            70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-362-P3a-v3_5p*
mirBase accessionNone
Sequence 
0- UAAUUCUUGCUCCCCAGGUGAGAGU -25
Get sequence
Mature sequence

Bta-Mir-362-P3a-v3_3p
mirBase accessionMIMAT0009339
Sequence 
40- UCCACCUGGGCAAGGAUUCUGA -62
Get sequence
Proposed targets TargetScanVert: bta-miR-502b
Variant

Bta-Mir-362-P3a-v1
Seed AUCCACC
Precursor
(pre-Mir +30nt flank)		 
CGUGGGACCGUCUGUUGUGGCUCCCCUCUCUAAUUCUUGCUCCCCAGGUGAGAGUGCUUUGUGAAUGCAAUCCACCUGGGCAAGGAUUCUGAAUGUGAGAGCUCCCAUCUUCCAUAUGGGAC
Get precursor sequence
Structure
        10         20         30         40        50        60  
CGUGGGACCGUCUGUUGU-     CCCUC-  U-|        UCC       A  G   UUUG 
                   GGCUC      UC  AAUUCUUGC   CCAGGUG GA UGC    \
                   UCGAG      AG  UUAGGAACG   GGUCCAC CU ACG    U
CAGGGUAUACCUUCUACCC     AGUGUA  UC^        ---       -  A   UAAG 
120       110       100        90        80            70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-362-P3a-v1_5p*
mirBase accessionNone
Sequence 
0- UAAUUCUUGCUCCCCAGGUGAGAGUGC -27
Get sequence
Mature sequence

Bta-Mir-362-P3a-v1_3p
mirBase accessionMIMAT0009339
Sequence 
38- AAUCCACCUGGGCAAGGAUUCUGA -62
Get sequence
Proposed targets TargetScanVert: bta-miR-502b
Variant

Bta-Mir-362-P3a-v2
Seed UCCACCU
Precursor
(pre-Mir +30nt flank)		 
CGUGGGACCGUCUGUUGUGGCUCCCCUCUCUAAUUCUUGCUCCCCAGGUGAGAGUGCUUUGUGAAUGCAAUCCACCUGGGCAAGGAUUCUGAAUGUGAGAGCUCCCAUCUUCCAUAUGGGAC
Get precursor sequence
Structure
        10         20         30         40        50        60  
CGUGGGACCGUCUGUUGU-     CCCUC-  U-|        UCC       A  G   UUUG 
                   GGCUC      UC  AAUUCUUGC   CCAGGUG GA UGC    \
                   UCGAG      AG  UUAGGAACG   GGUCCAC CU ACG    U
CAGGGUAUACCUUCUACCC     AGUGUA  UC^        ---       -  A   UAAG 
120       110       100        90        80            70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-362-P3a-v2_5p*
mirBase accessionNone
Sequence 
0- UAAUUCUUGCUCCCCAGGUGAGAGUGC -27
Get sequence
Mature sequence

Bta-Mir-362-P3a-v2_3p
mirBase accessionMIMAT0009339
Sequence 
39- AUCCACCUGGGCAAGGAUUCUGA -62
Get sequence
Proposed targets TargetScanVert: bta-miR-502b