Mir-188-P1

MirGeneDB ID

Bta-Mir-188-P1

Family name

MIR-188 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-532

Paralogues

Bta-Mir-188-P2 Bta-Mir-188-P3

Orthologues

Cfa-Mir-188-P1 Cja-Mir-188-P1 Cpo-Mir-188-P1 Dno-Mir-188-P1 Eca-Mir-188-P1 Hsa-Mir-188-P1 Laf-Mir-188-P1 Mml-Mir-188-P1 Mmr-Mir-188-P1 Mmu-Mir-188-P1 Ocu-Mir-188-P1 Pab-Mir-188-P1 Rno-Mir-188-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87724748-87724806 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P1)

Mir-188-P1 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P2 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P1-v1 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P1-v2 NC_037357.1: 87732069-87732124 [+] UCSC Ensembl
Mir-362-P3a-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P3a-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P3b-v1 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-362-P3b-v2 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87742037-87742096 [+] UCSC Ensembl

Seed

AUGCCUU

Precursor
(pre-Mir +30nt flank)

AGCAAACGUCCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGAGCCAGCCUUUUCCUCCCUCGGCAGU

Get precursor sequence

Structure

        10          20        30        40        50         
AGCAAACGUCCUGACUU--|  UU       A  U      A    A   CC  UGGCAU 
                   GCU  CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGA  GAGAGGA GU CGGAAC CACA CCU  CA      C
UGACGGCUCCCUCCUUUUC^  CC       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-188-P1_5p

mirBase accession

MIMAT0003848

Sequence

0- CAUGCCUUGAGUGUAGGACCGU -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-532

Star sequence

Bta-Mir-188-P1_3p*

mirBase accession

None

Sequence

37- CCUCCCACACCCAAGGCUUGCA -59

Get sequence