MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-188-P1

Family name MIR-188 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-188-P2  Cja-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Eca-Mir-188-P1  Hsa-Mir-188-P1  Laf-Mir-188-P1  Mml-Mir-188-P1  Mmr-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Pab-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 48744712-48744770 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-188-P1 CM021937.1: 48744712-48744770 [+] UCSC Ensembl
Mir-188-P2 CM021937.1: 48745060-48745119 [+] UCSC Ensembl
Mir-362-P3a-v1 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P3a-v2 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P4 CM021937.1: 48750538-48750596 [+] UCSC Ensembl
Mir-362-P5 CM021937.1: 48751289-48751347 [+] UCSC Ensembl
Mir-188-P3 CM021937.1: 48754892-48754950 [+] UCSC Ensembl
Seed AUGCCUU
Precursor
(pre-Mir +30nt flank)		 
AGCAAACCUCCCGACUUGCUUUCUCUCCUCCAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGAAGAGCGAGCCUUCUCUUCCCUCUCCAGU
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Structure
        10          20        30        40        50         
AGCAAACCUCCCGACUU--|   U    C  C  U      A    A   CC  UGGCAU 
                   GCUU CUCU CU CA GCCUUG GUGU GGA  GU      \
                   CGAG GAGA GA GU CGGAAC CACA CCU  CA      C
UGACCUCUCCCUUCUCUUC^   C    A  C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-188-P1_5p
mirBase accessionNone
Sequence 
0- CAUGCCUUGAGUGUAGGACCGU -22
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Star sequence

Cja-Mir-188-P1_3p*
mirBase accessionNone
Sequence 
37- CCUCCCACACCCAAGGCUUGCA -59
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