Mir-362-P4

MirGeneDB ID

Cja-Mir-362-P4

Family name

MIR-362 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-362-P3a-v1 Cja-Mir-362-P5

Orthologues

Bta-Mir-362-P4 Cfa-Mir-362-P4 Cpo-Mir-362-P4 Dno-Mir-362-P4 Eca-Mir-362-P4 Ete-Mir-362-P4 Hsa-Mir-362-P4 Laf-Mir-362-P4 Mml-Mir-362-P4 Mmr-Mir-362-P4 Mmu-Mir-362-P4 Ocu-Mir-362-P4 Pab-Mir-362-P4 Rno-Mir-362-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021937.1: 48750538-48750596 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P4)

Mir-188-P1 CM021937.1: 48744712-48744770 [+] UCSC Ensembl
Mir-188-P2 CM021937.1: 48745060-48745119 [+] UCSC Ensembl
Mir-362-P3a-v1 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P3a-v2 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P4 CM021937.1: 48750538-48750596 [+] UCSC Ensembl
Mir-362-P5 CM021937.1: 48751289-48751347 [+] UCSC Ensembl
Mir-188-P3 CM021937.1: 48754892-48754950 [+] UCSC Ensembl

Seed

AUCCUUG

Precursor
(pre-Mir +30nt flank)

CCAGAACCUUCUCAUCUGCUUCCCCUCUCGAAUCCUUGGAACCUAGGUGUGAGUGCUAUUUCAAUGCAACACACCUAUUCAAGGAUUCAAAGAGGUUGAGCCUUGUCUGCAUGUAGAAG

Get precursor sequence

Structure

        10         20         30        40        50        60 
CCAGAACCUUCUCAUCU-    CC     C-|          ACC        AG   UAUU 
                  GCUU  CCUCU  GAAUCCUUGGA   UAGGUGUG  UGC    \
                  CGAG  GGAGA  CUUAGGAACUU   AUCCACAC  ACG    U
GAAGAUGUACGUCUGUUC    UU     AA^          ---        A-   UAAC 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Mir-362-P4_5p

mirBase accession

None

Sequence

0- AAUCCUUGGAACCUAGGUGUGAGUGC -26

Get sequence

Star sequence

Cja-Mir-362-P4_3p*

mirBase accession

None

Sequence

36- CAACACACCUAUUCAAGGAUUCA -59

Get sequence