Mir-362-P4

MirGeneDB ID

Cfa-Mir-362-P4

Family name

MIR-362 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-362

Paralogues

Cfa-Mir-362-P3a-v1 Cfa-Mir-362-P3b Cfa-Mir-362-P6

Orthologues

Bta-Mir-362-P4 Cja-Mir-362-P4 Cpo-Mir-362-P4 Dno-Mir-362-P4 Eca-Mir-362-P4 Ete-Mir-362-P4 Hsa-Mir-362-P4 Laf-Mir-362-P4 Mml-Mir-362-P4 Mmr-Mir-362-P4 Mmu-Mir-362-P4 Ocu-Mir-362-P4 Pab-Mir-362-P4 Rno-Mir-362-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chrX: 42780369-42780427 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P4)

Mir-188-P1 chrX: 42774680-42774738 [+] UCSC Ensembl
Mir-188-P2 chrX: 42775072-42775131 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 42779871-42779932 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 42779872-42779931 [+] UCSC Ensembl
Mir-362-P4 chrX: 42780369-42780427 [+] UCSC Ensembl
Mir-362-P3b chrX: 42781869-42781930 [+] UCSC Ensembl
Mir-188-P3 chrX: 42783965-42784023 [+] UCSC Ensembl
Mir-362-P6 chrX: 42785601-42785660 [+] UCSC Ensembl

Seed

AUCCUUG

Precursor
(pre-Mir +30nt flank)

CCUUAGCCUUCUUAUCUGCUCCCCCUCUCGAAUCCUUGGAACCUAGGUGUGAGUGCUAUUUCGGUGCAACACACCUAUUCAAGGAUUCAAAGAGGCUGAGCCUUGUCUGCAUGUAGAAG

Get precursor sequence

Structure

        10         20         30        40        50        60 
CCUUAGCCUUCUUAUCU-    CC     C-|          ACC        AG   UAUU 
                  GCUC  CCUCU  GAAUCCUUGGA   UAGGUGUG  UGC    \
                  CGAG  GGAGA  CUUAGGAACUU   AUCCACAC  ACG    U
GAAGAUGUACGUCUGUUC    UC     AA^          ---        A-   UGGC 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-362-P4_5p

mirBase accession

MIMAT0009886

Sequence

0- AAUCCUUGGAACCUAGGUGUGAGUGC -26

Get sequence

Proposed targets

TargetScanVert: cfa-miR-362
miRDB: MIMAT0009886

Star sequence

Cfa-Mir-362-P4_3p*

mirBase accession

None

Sequence

37- AACACACCUAUUCAAGGAUUCA -59

Get sequence