Mir-362-P4

MirGeneDB ID

Eca-Mir-362-P4

Family name

MIR-362 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-362

Paralogues

Eca-Mir-362-P3a-v1 Eca-Mir-362-P3b-v1 Eca-Mir-362-P5 Eca-Mir-362-P6

Orthologues

Bta-Mir-362-P4 Cfa-Mir-362-P4 Cja-Mir-362-P4 Cpo-Mir-362-P4 Dno-Mir-362-P4 Ete-Mir-362-P4 Hsa-Mir-362-P4 Laf-Mir-362-P4 Mml-Mir-362-P4 Mmr-Mir-362-P4 Mmu-Mir-362-P4 Ocu-Mir-362-P4 Pab-Mir-362-P4 Rno-Mir-362-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 41478747-41478805 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P4)

Mir-188-P1 CM009179.1: 41473395-41473453 [+] UCSC Ensembl
Mir-188-P2 CM009179.1: 41473769-41473828 [+] UCSC Ensembl
Mir-362-P3a-v1 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P3a-v2 CM009179.1: 41478213-41478274 [+] UCSC Ensembl
Mir-362-P4 CM009179.1: 41478747-41478805 [+] UCSC Ensembl
Mir-362-P5 CM009179.1: 41479494-41479552 [+] UCSC Ensembl
Mir-362-P3b-v2 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-362-P3b-v1 CM009179.1: 41480028-41480089 [+] UCSC Ensembl
Mir-188-P3 CM009179.1: 41481460-41481518 [+] UCSC Ensembl
Mir-362-P6 CM009179.1: 41482336-41482395 [+] UCSC Ensembl

Seed

AUCCUUG

Precursor
(pre-Mir +30nt flank)

GCCUGGCCUUCUUGUCUGCUCCCCCUCUCGAAUCCUUGGAACCUAGGUGUGAGUGCCAUUUCAGUGCAACACACCUAUUCAAGGAUUCAAAGAGGCUGAGCCCUGUCUGCAUGUAGAAG

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Structure

        10         20         30        40        50        60 
GCCUGGCCUUCUUGUCU-    CC     C-|          ACC        AG   CAUU 
                  GCUC  CCUCU  GAAUCCUUGGA   UAGGUGUG  UGC    \
                  CGAG  GGAGA  CUUAGGAACUU   AUCCACAC  ACG    U
GAAGAUGUACGUCUGUCC    UC     AA^          ---        A-   UGAC 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-362-P4_5p

mirBase accession

MIMAT0013210

Sequence

0- AAUCCUUGGAACCUAGGUGUGAGUGC -26

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Star sequence

Eca-Mir-362-P4_3p*

mirBase accession

MIMAT0013211

Sequence

37- AACACACCUAUUCAAGGAUUCA -59

Get sequence