MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-188-P3

Family name MIR-188 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-660
Paralogues Cfa-Mir-188-P1  Cfa-Mir-188-P2 
Orthologues Bta-Mir-188-P3  Cja-Mir-188-P3  Cpo-Mir-188-P3  Dno-Mir-188-P3  Eca-Mir-188-P3  Ete-Mir-188-P3  Hsa-Mir-188-P3  Laf-Mir-188-P3  Mml-Mir-188-P3  Mmr-Mir-188-P3  Ocu-Mir-188-P3  Pab-Mir-188-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 42783965-42784023 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P3)		 Mir-188-P1 chrX: 42774680-42774738 [+] UCSC Ensembl
Mir-188-P2 chrX: 42775072-42775131 [+] UCSC Ensembl
Mir-362-P3a-v1 chrX: 42779871-42779932 [+] UCSC Ensembl
Mir-362-P3a-v2 chrX: 42779872-42779931 [+] UCSC Ensembl
Mir-362-P4 chrX: 42780369-42780427 [+] UCSC Ensembl
Mir-362-P3b chrX: 42781869-42781930 [+] UCSC Ensembl
Mir-188-P3 chrX: 42783965-42784023 [+] UCSC Ensembl
Mir-362-P6 chrX: 42785601-42785660 [+] UCSC Ensembl
Seed ACCCAUU
Precursor
(pre-Mir +30nt flank)		 
GUGGAGAAGAAUGAACUGCUCCUUCUCCUAUACCCAUUGCAUAUCGGAGUUGUGAAUUCUCAAAGCACCUCCUGUGUGCAUGGAUUACAGGAGGCUGAGCCUUGUCGUCACAAACCUUC
Get precursor sequence
Structure
        10          20        30         40        50         
GUGGAGAAGAAUGAACU--    CU      A  C-|   U      C    U   GAAUU 
                   GCUC  UCUCCU UA  CCAU GCAUAU GGAG UGU     \
                   CGAG  GGAGGA AU  GGUA CGUGUG CCUC ACG     C
CUUCCAAACACUGCUGUUC    UC      C  UA^   -      U    C   AAACU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-188-P3_5p
mirBase accessionMIMAT0006760
Sequence 
0- UACCCAUUGCAUAUCGGAGUUGU -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-660
miRDB: MIMAT0006760
Star sequence

Cfa-Mir-188-P3_3p*
mirBase accessionNone
Sequence 
36- ACCUCCUGUGUGCAUGGAUUACA -59
Get sequence