Mir-362-P5

MirGeneDB ID

Cja-Mir-362-P5

Family name

MIR-362 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-362-P3a-v1 Cja-Mir-362-P4

Orthologues

Cpo-Mir-362-P5 Eca-Mir-362-P5 Hsa-Mir-362-P5 Mml-Mir-362-P5 Mmr-Mir-362-P5 Mmu-Mir-362-P5 Ocu-Mir-362-P5 Pab-Mir-362-P5 Rno-Mir-362-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021937.1: 48751289-48751347 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P5)

Mir-188-P1 CM021937.1: 48744712-48744770 [+] UCSC Ensembl
Mir-188-P2 CM021937.1: 48745060-48745119 [+] UCSC Ensembl
Mir-362-P3a-v1 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P3a-v2 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P4 CM021937.1: 48750538-48750596 [+] UCSC Ensembl
Mir-362-P5 CM021937.1: 48751289-48751347 [+] UCSC Ensembl
Mir-188-P3 CM021937.1: 48754892-48754950 [+] UCSC Ensembl

Seed

AUGCACC

Precursor
(pre-Mir +30nt flank)

CCUGAGCCUUCUGCUUUGCUCUUUCUCUCCAAUCCUUUGUCCCUGGGUAAGAGUGCUUUCUGAAUGCCAUGCACCCAGGGAAGGAUUCGGCAAGGGGGAGUGUCAUCUUCCCAUAGGAC

Get precursor sequence

Structure

        10         20        30         40        50           
CCUGAGCCUUCUGCUUU-     UU  CU  -|     UUG         AAGA-  GCUUU 
                  GCUCU  CU  CC AAUCCU   UCCCUGGGU     GU     \
                  UGAGG  GA  GG UUAGGA   AGGGACCCA     CG     C
CAGGAUACCCUUCUACUG     GG  AC  C^     ---         CGUAC  UAAGU 
       110       100        90           80        70

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-362-P5_5p* (predicted)

mirBase accession

None

Sequence

0- AAUCCUUUGUCCCUGGGUAAGAGU -24

Get sequence

Mature sequence

Cja-Mir-362-P5_3p (predicted)

mirBase accession

None

Sequence

37- CAUGCACCCAGGGAAGGAUUCG -59

Get sequence