MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-199-P1

Family name MIR-199 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-199a-1
Paralogues Bta-Mir-199-P1-v1  Bta-Mir-199-P2-v1  Bta-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P1-v1  Ami-Mir-199-P1-v1  Cfa-Mir-199-P1-v1  Cja-Mir-199-P1-v1  Cli-Mir-199-P1-v1  Cmi-Mir-199-P1-v1  Cpi-Mir-199-P1-v1  Cpo-Mir-199-P1-v1  Dno-Mir-199-P1-v1  Dre-Mir-199-P1a-v1  Eca-Mir-199-P1-v1  Ete-Mir-199-P1-v1  Gga-Mir-199-P1-v1  Gja-Mir-199-P1-v1  Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1b-v1  Hsa-Mir-199-P1-v1  Laf-Mir-199-P1-v1  Lch-Mir-199-P1  Loc-Mir-199-P1-v1  Mal-Mir-199-P1a-v1  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mdo-Mir-199-P1-v1  Mml-Mir-199-P1-v1  Mmr-Mir-199-P1-v1  Mmu-Mir-199-P1-v1  Mun-Mir-199-P1-v1  Neu-Mir-199-P1-v1  Oan-Mir-199-P1-v1  Ocu-Mir-199-P1-v1  Pab-Mir-199-P1-v1  Pbv-Mir-199-P1-v1  Pma-Mir-199-o1  Rno-Mir-199-P1-v1  Sha-Mir-199-P1-v1  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Tgu-Mir-199-P1-v1  Tni-Mir-199-P1b-v1  Xla-Mir-199-P1c-v1  Xla-Mir-199-P1d-v1  Xtr-Mir-199-P1-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037343.1: 39625357-39625417 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P1-v2)		 Mir-214-v1 NC_037343.1: 39619567-39619629 [-] UCSC Ensembl
Mir-214-v2 NC_037343.1: 39619567-39619629 [-] UCSC Ensembl
Mir-199-P1-v1 NC_037343.1: 39625357-39625417 [-] UCSC Ensembl
Mir-199-P1-v2 NC_037343.1: 39625357-39625417 [-] UCSC Ensembl
Mir-199-P1-v3 NC_037343.1: 39625357-39625417 [-] UCSC Ensembl
Variant

Bta-Mir-199-P1-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
UGGAAGCUUCUGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGAGAGCAACGCCAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UGGAAGCUUCUGGAGAU-  -|    C   GCC       U        C   U  GGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU CA     A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA GU     U
CAGGUACCGCAACGAGAG  A^    U   AUU       C        -   U  UGCCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-199-P1-v2_5p*
mirBase accessionMIMAT0003544
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
Get sequence
Proposed targets TargetScanVert: bta-miR-199a-5p
Mature sequence

Bta-Mir-199-P1-v2_3p
mirBase accessionMIMAT0003746
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: bta-miR-199a-3p
Variant

Bta-Mir-199-P1-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
UGGAAGCUUCUGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGAGAGCAACGCCAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UGGAAGCUUCUGGAGAU-  -|    C   GCC       U        C   U AGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU C      A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA G      U
CAGGUACCGCAACGAGAG  A^    U   AUU       C        -   U UUGCCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-199-P1-v1_5p*
mirBase accessionMIMAT0003544
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Proposed targets TargetScanVert: bta-miR-199a-5p
Mature sequence

Bta-Mir-199-P1-v1_3p
mirBase accessionMIMAT0003746
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: bta-miR-199a-3p
Variant

Bta-Mir-199-P1-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
UGGAAGCUUCUGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCCGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGAGAGCAACGCCAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UGGAAGCUUCUGGAGAU-  -|    C   GCC       U        C   UCAGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU        A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA        U
CAGGUACCGCAACGAGAG  A^    U   AUU       C        -   UGUUGCCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-199-P1-v3_5p*
mirBase accessionMIMAT0003544
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
Get sequence
Proposed targets TargetScanVert: bta-miR-199a-5p
Mature sequence

Bta-Mir-199-P1-v3_3p
mirBase accessionMIMAT0003746
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: bta-miR-199a-3p