MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-122

Family name MIR-122 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-122
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cja-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Eca-Mir-122  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Laf-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmr-Mir-122  Mmr-Mir-122-as  Mmu-Mir-122  Mun-Mir-122  Neu-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pab-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr1: 188440161-188440218 [-] UCSC Ensembl
Seed GGAGUGU
Precursor
(pre-Mir +30nt flank)		 
UUCUGAUCGGGAGUCGGACUGCUGGAGCUAUGGAGUGUGACAAUGGUGUUUGUGUCAGAGCUAUCAAACGCCAUUAUCACACUAAUGAGCUACUGCAGGCACACUCACUCACUGGCUG
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Structure
        10          20        30        40        50        
UUCUGAUCGGGAGUCGGA--|   UGG    AUGG       C           UGUCA 
                    CUGC   AGCU    AGUGUGA AAUGGUGUUUG     G
                    GACG   UCGA    UCACACU UUACCGCAAAC     A
GUCGGUCACUCACUCACACG^   UCA    GUAA       A           UAUCG 
      110       100        90        80        70        60
Deep sequencing
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CommentThe 5p read is mono-adenylated at its 3' end.
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-122_5p
mirBase accessionMIMAT0003585
Sequence 
0- UGGAGUGUGACAAUGGUGUUUG -22
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Proposed targets TargetScanVert: xtr-miR-122
Star sequence

Xtr-Mir-122_3p*
mirBase accessionNone
Sequence 
36- AACGCCAUUAUCACACUAAUGA -58
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