MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-122

Family name MIR-122 (all species)
Seed GGAGUGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Lch-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmu-Mir-122  Mun-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG2: 49304315-49304372 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAUCUCUCAGCCCUGGCUUUCAAAGCUGUGGAGUGUGACAAUGGUGUUUGUGUGACUGAUAUCAAACGCCAUUAUCACACUAAAUAGCUAUGGUAAGACACUUUGCUUCUUCCACC
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Structure
        10         20         30        40        50        
CAGAUCUCUCAGCCCUGG-   -|  A      GG       C           UGUGA 
                   CUU UCA AGCUGU  AGUGUGA AAUGGUGUUUG     C
                   GAA GGU UCGAUA  UCACACU UUACCGCAAAC     U
CCACCUUCUUCGUUUCACA   U^  A      AA       A           UAUAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-122_5p

mirBase accessionNone
Sequence
0- UGGAGUGUGACAAUGGUGUUUGU -23
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Star sequence

Loc-Mir-122_3p*

mirBase accessionNone
Sequence
35- AAACGCCAUUAUCACACUAAAUA -58
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