MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-122

Family name MIR-122 (all species)
Seed GGAGUGU
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-122
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmu-Mir-122  Mun-Mir-122  Ocu-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041730.1: 72516067-72516124 [+]
Precursor
(pre-Mir +30nt flank)
UCAACCUUGGAUUGUUUGCUACCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCCAGUCUAUCAAACGCCAUUAUCACACUAAAUAGCUACUGUAGGGCCAUCCGUCUCUUCAGAG
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Structure
        10          20         30        40        50        
UCAACCUUGGAUUGUUUG--|   C  -      GG       C           UGUCC 
                    CUAC AG AGCUGU  AGUGUGA AAUGGUGUUUG     A
                    GAUG UC UCGAUA  UCACACU UUACCGCAAAC     G
GAGACUUCUCUGCCUACCGG^   -  A      AA       A           UAUCU 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-122_5p

mirBase accessionMIMAT0006825
Sequence
0- UGGAGUGUGACAAUGGUGUUUG -22
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Star sequence

Oan-Mir-122_3p*

mirBase accessionMIMAT0006826
Sequence
36- AACGCCAUUAUCACACUAAAUA -58
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