MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-122

Family name MIR-122 (all species)
Seed GGAGUGU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-122
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mun-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Sha-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr18: 65248866-65248923 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCCUGACAGACUUUCCUUAGCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCCAAACCAUCAAACGCCAUUAUCACACUAAAUAGCUACUGCUAGGCAAUCCGUCCACUCCACG
Get precursor sequence
Structure
        10         20         30        40        50        
GUGCCUGACAGACUUUC-        -|     GG       C           UGUCC 
                  CUUAGCAG AGCUGU  AGUGUGA AAUGGUGUUUG     A
                  GGAUCGUC UCGAUA  UCACACU UUACCGCAAAC     A
GCACCUCACCUGCCUAAC        A^     AA       A           UACCA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut is shifted +1 in murid rodents relative to other vertebrates (except Echinops). The ancestral cut though is also seen and this cut is mono-adenylated at the 3p end.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-122_5p

mirBase accessionMIMAT0000246
Sequence
0- UGGAGUGUGACAAUGGUGUUUGU -23
Get sequence
Proposed targets microrna.org: MIMAT0000246
TargetScanVert: mmu-miR-122-5p
miRDB: MIMAT0000246
Star sequence

Mmu-Mir-122_3p*

mirBase accessionMIMAT0017005
Sequence
35- AAACGCCAUUAUCACACUAAAUA -58
Get sequence
Proposed targets TargetScanVert: mmu-miR-122-3p
miRDB: MIMAT0017005