| MirGeneDB ID | Lch-Mir-122 |
|---|---|
| Family name | MIR-122 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-122 Ami-Mir-122 Bta-Mir-122 Cfa-Mir-122 Cja-Mir-122 Cli-Mir-122 Cmi-Mir-122 Cpi-Mir-122 Cpo-Mir-122 Dno-Mir-122 Dre-Mir-122 Ebu-Mir-122-P3 Ebu-Mir-122-P4 Eca-Mir-122 Ete-Mir-122 Gga-Mir-122-P1 Gga-Mir-122-P2 Gja-Mir-122 Gmo-Mir-122 Hsa-Mir-122 Laf-Mir-122 Loc-Mir-122 Mal-Mir-122 Mdo-Mir-122 Mml-Mir-122 Mmr-Mir-122 Mmr-Mir-122-as Mmu-Mir-122 Mun-Mir-122 Neu-Mir-122 Oan-Mir-122 Ocu-Mir-122 Pab-Mir-122 Pbv-Mir-122 Pma-Mir-122 Rno-Mir-122 Sha-Mir-122 Spt-Mir-122 Sto-Mir-122 Tgu-Mir-122 Tni-Mir-122 Xla-Mir-122-P5 Xla-Mir-122-P6 Xtr-Mir-122 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127895.1: 9518-9576 [-] Ensembl |
| Seed | GGAGUGU |
| Precursor (pre-Mir +30nt flank) |
GGGUCUGCAAUCAAUGAUCUGUCAGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCUGAUCAUAUCAAACGCCAUUAUCACACUAAAUAGCUAUAGCAAGAAAUUGGUCACCUUAAGACGet precursor sequence |
| Structure | 10 20 30 40 50 GGGUCUGCAAUCAAUGA- -| CAG GG C UGUCUG UC UGU AGCUGU AGUGUGA AAUGGUGUUUG \ AG ACG UCGAUA UCACACU UUACCGCAAAC A CAGAAUUCCACUGGUUAA A^ AUA AA A UAUACU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-122_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGGAGUGUGACAAUGGUGUUUGU -23
Get sequence
|
| Star sequence | Lch-Mir-122_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- AAACGCCAUUAUCACACUAAAUA -59
Get sequence
|
