MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-122

Family name MIR-122 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-122  Ami-Mir-122  Bta-Mir-122  Cfa-Mir-122  Cja-Mir-122  Cli-Mir-122  Cmi-Mir-122  Cpi-Mir-122  Cpo-Mir-122  Dno-Mir-122  Dre-Mir-122  Ebu-Mir-122-P3  Ebu-Mir-122-P4  Eca-Mir-122  Ete-Mir-122  Gga-Mir-122-P1  Gga-Mir-122-P2  Gja-Mir-122  Gmo-Mir-122  Hsa-Mir-122  Laf-Mir-122  Lch-Mir-122  Loc-Mir-122  Mal-Mir-122  Mdo-Mir-122  Mml-Mir-122  Mmr-Mir-122  Mmr-Mir-122-as  Mmu-Mir-122  Mun-Mir-122  Neu-Mir-122  Oan-Mir-122  Ocu-Mir-122  Pab-Mir-122  Pbv-Mir-122  Pma-Mir-122  Rno-Mir-122  Spt-Mir-122  Sto-Mir-122  Tgu-Mir-122  Tni-Mir-122  Xla-Mir-122-P5  Xla-Mir-122-P6  Xtr-Mir-122 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL841174.1: 2987112-2987169 [-] UCSC Ensembl
Seed GGAGUGU
Precursor
(pre-Mir +30nt flank)		 
UUGGGCUGUGUGUUAUCCUUGCCAGAGCUAUGGAGUGUGACAAUGGUGUUUGUGUCCAGUCUAUCAAACGCCAUUAUCACACUAAAUAGCUAUAGUUGGGUACUCCAUCUCUUCAGGG
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Structure
        10          20        30        40        50        
UUGGGCUGUGUGUUAUC--| U  CAG      GG       C           UGUCC 
                   CU GC   AGCUAU  AGUGUGA AAUGGUGUUUG     A
                   GG UG   UCGAUA  UCACACU UUACCGCAAAC     G
GGGACUUCUCUACCUCAUG^ U  AUA      AA       A           UAUCU 
      110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-122_5p
mirBase accessionNone
Sequence 
0- UGGAGUGUGACAAUGGUGUUUG -22
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Star sequence

Sha-Mir-122_3p*
mirBase accessionNone
Sequence 
36- AACGCCAUUAUCACACUAAAUA -58
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