| MirGeneDB ID | Xla-Mir-122-P5 |
|---|
| Family name |
MIR-122 (all species) |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Mir-122-P6
|
|---|
| Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cja-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Dre-Mir-122
Eca-Mir-122
Ete-Mir-122
Gja-Mir-122
Gmo-Mir-122
Hsa-Mir-122
Laf-Mir-122
Lch-Mir-122
Loc-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mml-Mir-122
Mmr-Mir-122
Mmu-Mir-122
Mun-Mir-122
Neu-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pab-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Sto-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xtr-Mir-122
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030724.1: 206046625-206046682 [-]
UCSC
Ensembl
|
|---|
| Seed |
GGAGUGU |
|---|
Precursor
(pre-Mir +30nt flank) |
UCAUAUGCUGGGAAUGGACUGCUGGAGCUAUGGAGUGUGACAAUGGUGUUUGUGUCAGAGCUAUCAAACGCCAUUAUCACACUAAUGAGCUACUGCAGACACACUCACUCACUGUCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCAUAUGCUGGGAAUGGA--| UGG AUGG C UGUCA
CUGC AGCU AGUGUGA AAUGGUGUUUG G
GACG UCGA UCACACU UUACCGCAAAC A
CUCUGUCACUCACUCACACA^ UCA GUAA A UAUCG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Mir-122-P5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
Get sequence
|
|---|
| Star sequence |
Xla-Mir-122-P5_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AACGCCAUUAUCACACUAAUGA -58
Get sequence
|
|---|
