| MirGeneDB ID | Xla-Mir-122-P6 |
|---|
| Family name |
MIR-122 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
xla-mir-122
|
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| Paralogues |
Xla-Mir-122-P5
|
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| Orthologues |
Aca-Mir-122
Ami-Mir-122
Bta-Mir-122
Cfa-Mir-122
Cja-Mir-122
Cli-Mir-122
Cmi-Mir-122
Cpi-Mir-122
Cpo-Mir-122
Dno-Mir-122
Dre-Mir-122
Eca-Mir-122
Ete-Mir-122
Gja-Mir-122
Gmo-Mir-122
Hsa-Mir-122
Laf-Mir-122
Lch-Mir-122
Loc-Mir-122
Mal-Mir-122
Mdo-Mir-122
Mml-Mir-122
Mmr-Mir-122
Mmu-Mir-122
Mun-Mir-122
Neu-Mir-122
Oan-Mir-122
Ocu-Mir-122
Pab-Mir-122
Pbv-Mir-122
Pma-Mir-122
Rno-Mir-122
Sha-Mir-122
Spt-Mir-122
Sto-Mir-122
Tgu-Mir-122
Tni-Mir-122
Xtr-Mir-122
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030725.1: 169871921-169871978 [-]
UCSC
Ensembl
|
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| Seed |
GGAGUGU |
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Precursor
(pre-Mir +30nt flank) |
UGAUAUGCUGGAAAUGGACUGCUGGAGCUGUGGAGUGUGACAAUGGUGUUUGUGUCAGAGCUAUCAAACGCCAUUAUCACACUAAUGAGCUACUGCAGGCACAUUCACUCACUCACUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAUAUGCUGGAAAUGGA--| UGG GUGG C UGUCA
CUGC AGCU AGUGUGA AAUGGUGUUUG G
GACG UCGA UCACACU UUACCGCAAAC A
CUCACUCACUCACUUACACG^ UCA GUAA A UAUCG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-122-P6_5p |
| mirBase accession | MIMAT0046426 |
|---|
| Sequence |
0- UGGAGUGUGACAAUGGUGUUUG -22
Get sequence
|
|---|
| Star sequence |
Xla-Mir-122-P6_3p* |
| mirBase accession | MIMAT0046427 |
|---|
| Sequence |
36- AACGCCAUUAUCACACUAAUGA -58
Get sequence
|
|---|
