MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-1788-P1

Family name MIR-1788 (all species)
Seed AGGCAGC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-1788-P2 
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xtr-Mir-1788 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030740.1: 52411780-52411838 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAGGCCUUUCCUGCCCUCCUGAGUCCUGGGCUUGUUUUAAGUUGCCUGUGAUUGUUGGAUAGAGCACAGGCAGCUAAAGCAAGUCUGGGAAGCUGGGGACAAAUCUGCUCAACAAAG
Get precursor sequence
Structure
        10        20          30        40        50         
ACCAGGCCUUUCCUGCCC    G   --| UG           A          AUUGUU 
                  UCCU AGU  CC  GGCUUGUUUUA GUUGCCUGUG      G
                  AGGG UCG  GG  CUGAACGAAAU CGACGGACAC      G
GAAACAACUCGUCUAAAC    G   AA^ GU           -          GAGAUA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-1788-P1_5p*
mirBase accessionNone
Sequence 
0- GGCUUGUUUUAAGUUGCCUGUG -22
Get sequence
Mature sequence

Xla-Mir-1788-P1_3p
mirBase accessionNone
Sequence 
38- CAGGCAGCUAAAGCAAGUCUG -59
Get sequence