MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-1788

Family name MIR-1788 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015168675.1: 535117-535175 [+]
Seed AGGCAGC
Precursor
(pre-Mir +30nt flank)		 
GCAUCAGAACCACAUAGCCUACCUGCGCUGGGCUUGUUUUCAGUUGCCUGCGGCUUAUUGGGAGGACUCAGGCAGCUAAAGCAAGUCUGGGGCAUGAAAGGAGAACCAGCAGAAUCAUC
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Structure
        10         20         30        40        50         
GCAUCAGAACCACAUAG-   ACC-|  G UG          C         CGGCUUAU 
                  CCU    UGC C  GGCUUGUUUU AGUUGCCUG        U
                  GGA    ACG G  CUGAACGAAA UCGACGGAC        G
CUACUAAGACGACCAAGA   AAGU^  G GU          -         UCAGGAGG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-1788_5p*
mirBase accessionNone
Sequence 
0- GGCUUGUUUUCAGUUGCCUGCG -22
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Mature sequence

Gja-Mir-1788_3p
mirBase accessionNone
Sequence 
38- CAGGCAGCUAAAGCAAGUCUG -59
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