MirGeneDB 2.1

22 microRNA genes with seed AGGCAGC
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Aca-Mir-1788 aca-mir-1788 MIR-1788 AGGCAGC MIMAT0021805 MIMAT0021806 1 87812135 87812194 - Vertebrata Vertebrata Yes 1
Ami-Mir-1788 ami-mir-1788 MIR-1788 GCUUGUU MIMAT0038325 MIMAT0038326 NW_017709636.1 31513 31572 - Vertebrata Vertebrata Yes 1
Cli-Mir-1788 cli-mir-1788 MIR-1788 AGGCAGC MIMAT0038700 MIMAT0038701 scaffold32 1391518 1391576 - Vertebrata Vertebrata Yes 1
Cpi-Mir-1788 cpi-mir-1788 MIR-1788 GCUUGUU MIMAT0037936 MIMAT0037937 JH587013 13349 13407 + Vertebrata Vertebrata Yes 1
Dre-Mir-1788 dre-mir-1788 MIR-1788 GCUUGUU MIMAT0011294 MIMAT0011295 chr9 11551626 11551682 - Vertebrata Vertebrata Yes 1 1
Ebu-Mir-1788 None MIR-1788 AGGCAGC None None FYBX02009973.1 681487 681541 + Vertebrata Vertebrata Yes 1
Gga-Mir-1788 gga-mir-1788 MIR-1788 GCUUGUU MIMAT0007700 MIMAT0007701 7 22354033 22354091 + Vertebrata Vertebrata Yes 1 1
Gja-Mir-1788 None MIR-1788 AGGCAGC None None NW_015168675.1 535117 535175 + Vertebrata Vertebrata Yes 1
Gmo-Mir-1788 gmo-mir-1788 MIR-1788 AGGCAGC MIMAT0044124 MIMAT0044125 GeneScaffold_1550 212983 213039 - Vertebrata Vertebrata Yes 1
Lch-Mir-1788 None MIR-1788 AGGCAGC None None JH126836.1 982506 982564 - Vertebrata Vertebrata Unknown
Loc-Mir-1788 None MIR-1788 AGGCAGC None None LG12 11014479 11014536 - Vertebrata Vertebrata Yes 1
Mal-Mir-1788 None MIR-1788 AGGCAGC None None KV884776.1 34824 34881 + Vertebrata Vertebrata Unknown 1
Mun-Mir-1788 None MIR-1788 AGGCAGC None None 1788_LR594638.1:304605141-304605283 43 101 - Vertebrata Vertebrata No 1
Pbv-Mir-1788 pbv-mir-1788 MIR-1788 AGGCAGC MIMAT0039085 MIMAT0039086 KE952971.1 1064609 1064667 - Vertebrata Vertebrata Yes 1
Pma-Mir-1788 pma-mir-1788a MIR-1788 GCUUGUU MIMAT0019561 MIMAT0019562 NC_046070.1 17174897 17174957 + Vertebrata Vertebrata Yes
Spt-Mir-1788 None MIR-1788 AGGCAGC None None QEPC01014018.1 10535 10593 - Vertebrata Vertebrata Unknown
Sto-Mir-1788 None MIR-1788 AGGCAGC None None BFAA01085147.1 745 807 + Vertebrata Vertebrata Unknown 1
Tgu-Mir-1788 tgu-mir-1788 MIR-1788 AGGCAGC MIMAT0025407 None 7 10133597 10133655 - Vertebrata Vertebrata Unknown 1
Xtr-Mir-1788 None MIR-1788 AGGCAGC None None chr9 77516409 77516467 - Vertebrata Vertebrata Yes 1
Xla-Mir-1788-P1 None MIR-1788 AGGCAGC None None NC_030740.1 52411780 52411838 + X. laevis Vertebrata Yes 1
Xla-Mir-1788-P2 None MIR-1788 AGGCAGC None None NC_030741.1 47696710 47696768 + X. laevis Vertebrata Yes 1
Cin-Novel-1 None CIN-NOVEL-1 AGGCAGC None None HT001221.1 6546 6600 - C. intestinalis C. intestinalis No 1

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