| MirGeneDB ID | Lch-Mir-1788 |
|---|---|
| Family name | MIR-1788 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1788 Ami-Mir-1788 Cli-Mir-1788 Cmi-Mir-1788 Cpi-Mir-1788 Dre-Mir-1788 Ebu-Mir-1788 Gga-Mir-1788 Gja-Mir-1788 Gmo-Mir-1788 Loc-Mir-1788 Mal-Mir-1788 Mun-Mir-1788 Pbv-Mir-1788 Pma-Mir-1788 Spt-Mir-1788 Sto-Mir-1788 Tgu-Mir-1788 Tni-Mir-1788 Xla-Mir-1788-P1 Xla-Mir-1788-P2 Xtr-Mir-1788 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126836.1: 982506-982564 [-] Ensembl |
| Seed | AGGCAGC |
| Precursor (pre-Mir +30nt flank) |
ACUCUGACCCUUUCUUUCUCUUGGGUUCUGGGCUUGUUUUAAGUUGCCUGUGAUUACAUAGCAGAACUCAGGCAGCUAAAGCAAGUCUGGAAAGCAGGAGUCAAGUACAUCAGGGUGAGGet precursor sequence |
| Structure | 10 20 30 40 50 ACUCUGACCCUUUCUUU--| GG UG A UGAUUACA CUCUUG UUC GGCUUGUUUUA GUUGCCUG U GAGGAC AAG CUGAACGAAAU CGACGGAC A GAGUGGGACUACAUGAACU^ GA GU - UCAAGACG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-1788_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGCUUGUUUUAAGUUGCCUGUG -22
Get sequence
|
| Mature sequence | Lch-Mir-1788_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- CAGGCAGCUAAAGCAAGUCUG -59
Get sequence
|
