MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-1788

Family name MIR-1788 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884776.1: 34824-34881 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1788)		 Mir-375-P2 KV884776.1: 22136-22193 [+] UCSC Ensembl
Mir-1788 KV884776.1: 34824-34881 [+] UCSC Ensembl
Seed AGGCAGC
Precursor
(pre-Mir +30nt flank)		 
CACUCCGUCGGUGACACAGUCUAGCAUUCGAGGCUUGUUUUAAGUUGCCUGCGACUCAUAUUGGACACAGGCAGCUAAAGCAAGUCUGGGACGCCAGAGACACAUCAACGAGCCCAGC
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Structure
        10         20        30        40        50         
CACUCCGUCGGUGACACAG-|  A  A   G            A        CGACUCA 
                    UCU GC UUC AGGCUUGUUUUA GUUGCCUG       U
                    AGA CG AGG UCUGAACGAAAU CGACGGAC       A
CGACCCGAGCAACUACACAG^  C  C   G            -        ACAGGUU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-1788_5p*
mirBase accessionNone
Sequence 
0- AGGCUUGUUUUAAGUUGCCUGCG -23
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Mature sequence

Mal-Mir-1788_3p
mirBase accessionNone
Sequence 
37- CAGGCAGCUAAAGCAAGUCUG -58
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