MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-1788

Family name MIR-1788 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1788
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 7: 22354033-22354091 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1788)		 Mir-375 7: 22344642-22344699 [+] UCSC Ensembl
Mir-1788 7: 22354033-22354091 [+] UCSC Ensembl
Seed GCUUGUU
Precursor
(pre-Mir +30nt flank)		 
UGGCUCUUCCCCCCACCCUGCUGUGUCCCGGGCUUGUUUUCCGUUGCCUGCGGUGUGUUGCAGUGACUCAGGCAGCGAAAGCAAGUCUGGGAGGCUGUGGAGAAGCUGCAGGGCAGGCA
Get precursor sequence
Structure
        10          20        30        40        50         
UGGCUCUUCCCCCCACC--|UG U  G                C        CGGUGUGU 
                   C  C GU UCCCGGGCUUGUUUUC GUUGCCUG        U
                   G  G CG AGGGUCUGAACGAAAG CGACGGAC        G
ACGGACGGGACGUCGAAGA^GU U  G                -        UCAGUGAC 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-1788_5p
mirBase accessionMIMAT0007700
Sequence 
0- GGCUUGUUUUCCGUUGCCUGCG -22
Get sequence
Proposed targets TargetScanVert: gga-miR-1788-5p
miRDB: MIMAT0007700
Co-mature sequence

Gga-Mir-1788_3p
mirBase accessionMIMAT0007701
Sequence 
38- CAGGCAGCGAAAGCAAGUCUG -59
Get sequence
Proposed targets TargetScanVert: gga-miR-1788-3p
miRDB: MIMAT0007701