MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-1788

Family name MIR-1788 (all species)
Seed GCUUGUU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Tni-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI636070.1: 19404-19464 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGCAAUGCCGGACUCUCCCUUCGUUCCGGGCUUGUUUAAGUUGCCUGUACGUGUGUGUAUGUGGGACACAGGCAGCUAAAGCAAGCCUGGAAACUGAGAGACAACCGCACUGGAGAUGG
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Structure
        10         20         30        40        50          
CCAGCAAUGCCGGACUC-  C   CG-|             A          ACGUGUGUG 
                  UC CUU   UUCCGGGCUUGUUU AGUUGCCUGU         \
                  AG GAG   AAGGUCCGAACGAA UCGACGGACA         U
GGUAGAGGUCACGCCAAC  A   UCA^             A          CAGGGUGUA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-1788_5p

mirBase accessionNone
Sequence
0- GGCUUGUUUAAGUUGCCUGUA -21
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Star sequence

Cmi-Mir-1788_3p*

mirBase accessionNone
Sequence
40- CAGGCAGCUAAAGCAAGCCUG -61
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