| MirGeneDB ID | Cin-Novel-1 |
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| Family name |
CIN-NOVEL-1 (all species) |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
HT001221.1: 6546-6600 [-]
UCSC
Ensembl
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| Seed |
AGGCAGC |
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Precursor
(pre-Mir +30nt flank) |
AUUUUUUGCCUCAAACUUCCCAUAAAGCGAAGGCUUCCUUAGUCCUGACCUACGAUGAUGACGUAGGCAGCUAAAGCAAGCCUUCAUUUUAAUGGGAGCAUACGUCAUCGUUACG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUUUUUGCCUCAAACU- - C C -| UC A AUG
UCCCA UAAAG GAAGGCUU C UUAG CUG CCUACG \
AGGGU AUUUU CUUCCGAA G AAUC GAC GGAUGC A
GCAUUGCUACUGCAUACG A A C A^ -- - AGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Star sequence |
Cin-Novel-1_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGCUUCCUUAGUCCUGACCUACG -24
Get sequence
|
|---|
| Mature sequence |
Cin-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
33- UAGGCAGCUAAAGCAAGCCUUC -55
Get sequence
|
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