MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-499-P1

Family name MIR-499 (all species)
Seed UAAGACU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Ebu-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pbv-Mir-499  Pma-Mir-499  Rno-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Xtr-Mir-499 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 11: 10019981-10020040 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGGAGAGAAAGAGCUGGGAUGGAGGCAGUUAAGACUUGCAGUGAUGUUUAGGGCAAUGAUCACAUGAACAUCACUUUAAGUCUGUGCUGGCUCCUCUCCUCGGACGUCGCCUGGGAGG
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Structure
        10           20        30        40        50         
UUGGGAGAGAAAGAGCU---|   U    G    UA       C           GGGCAA 
                    GGGA GGAG CAGU  AGACUUG AGUGAUGUUUA      U
                    CUCU CCUC GUCG  UCUGAAU UCACUACAAGU      G
GGAGGGUCCGCUGCAGGCUC^   -    G    UG       U           ACACUA 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-499-P1_5p
mirBase accessionNone
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
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Star sequence

Tni-Mir-499-P1_3p* (predicted)
mirBase accessionNone
Sequence 
38- AACAUCACUUUAAGUCUGUGCU -60
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