| MirGeneDB ID | Spt-Mir-499 |
|---|---|
| Family name | MIR-499 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-499 Ami-Mir-499 Bta-Mir-499 Cfa-Mir-499 Cja-Mir-499 Cli-Mir-499 Cpi-Mir-499 Cpo-Mir-499 Dno-Mir-499 Dre-Mir-499-P1 Dre-Mir-499-P2 Ebu-Mir-499 Eca-Mir-499 Ete-Mir-499 Gga-Mir-499 Gja-Mir-499 Gmo-Mir-499-P1 Hsa-Mir-499 Laf-Mir-499 Lch-Mir-499 Loc-Mir-499 Mal-Mir-499-P1 Mdo-Mir-499 Mml-Mir-499 Mmr-Mir-499 Mmu-Mir-499 Mun-Mir-499 Oan-Mir-499 Ocu-Mir-499 Pab-Mir-499 Pbv-Mir-499 Pma-Mir-499 Rno-Mir-499 Sha-Mir-499 Sto-Mir-499 Tgu-Mir-499 Tni-Mir-499-P1 Xla-Mir-499-P3 Xla-Mir-499-P4 Xtr-Mir-499 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01001485.1: 541065-541124 [+] UCSC Ensembl |
| Seed | UAAGACU |
| Precursor (pre-Mir +30nt flank) |
CUGGCCACUUCUCCAUUGAGGGAGAGGCAGUUAAGACUUGCAGUGAUGUUUAGAUAAUUUAUUACAUGAACAUCACUUUAAGUCUGUGCUACUUCUCUCCUCAUUCUUGACUGCGGGAAGGet precursor sequence |
| Structure | 10 20 30 40 50 CUGGCCACUUCUCCAUU- -| C UA C GAUAAU GAGG GAGAGG AGU AGACUUG AGUGAUGUUUA U CUCC CUCUUC UCG UCUGAAU UCACUACAAGU U GAAGGGCGUCAGUUCUUA U^ A UG U ACAUUA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Spt-Mir-499_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUAAGACUUGCAGUGAUGUUUA -22
Get sequence
|
| Star sequence | Spt-Mir-499_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- AACAUCACUUUAAGUCUGUGCU -60
Get sequence
|
