Mir-499

MirGeneDB ID

Cja-Mir-499

Family name

MIR-499 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-499 Ami-Mir-499 Bta-Mir-499 Cfa-Mir-499 Cli-Mir-499 Cpi-Mir-499 Cpo-Mir-499 Dno-Mir-499 Dre-Mir-499-P1 Dre-Mir-499-P2 Ebu-Mir-499 Eca-Mir-499 Ete-Mir-499 Gga-Mir-499 Gja-Mir-499 Gmo-Mir-499-P1 Hsa-Mir-499 Laf-Mir-499 Lch-Mir-499 Loc-Mir-499 Mal-Mir-499-P1 Mdo-Mir-499 Mml-Mir-499 Mmr-Mir-499 Mmu-Mir-499 Mun-Mir-499 Oan-Mir-499 Ocu-Mir-499 Pab-Mir-499 Pbv-Mir-499 Pma-Mir-499 Rno-Mir-499 Sha-Mir-499 Spt-Mir-499 Sto-Mir-499 Tgu-Mir-499 Tni-Mir-499-P1 Xla-Mir-499-P3 Xla-Mir-499-P4 Xtr-Mir-499

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021919.1: 2198098-2198156 [-] UCSC Ensembl

Seed

UAAGACU

Precursor
(pre-Mir +30nt flank)

CCUGUCCCCUGCGCCUUGGGCGGGCGGCCGUUAAGACUUGCAGUGAUGUUUAACUCCUCUCCACGUGAACAUCACAGCAAGUCUGUGCUGCUUCCCGUCCCUACGCUGCCUGGGCAGGG

Get precursor sequence

Structure

        10          20        30        40        50         
CCUGUCCCCUGCGCCUU--|      C   C  UA        A          ACUCCU 
                   GGGCGGG GGC GU  AGACUUGC GUGAUGUUUA      \
                   CCUGCCC UCG CG  UCUGAACG CACUACAAGU      C
GGGACGGGUCCGUCGCAUC^      U   U  UG        A          GCACCU 
       110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Mir-499_5p (predicted)

mirBase accession

None

Sequence

0- UUAAGACUUGCAGUGAUGUUUA -22

Get sequence

Star sequence

Cja-Mir-499_3p* (predicted)

mirBase accession

None

Sequence

37- AACAUCACAGCAAGUCUGUGCU -59

Get sequence