Mir-499

MirGeneDB ID

Hsa-Mir-499

Family name

MIR-499 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-499a

Paralogues

Orthologues

Aca-Mir-499 Ami-Mir-499 Bta-Mir-499 Cfa-Mir-499 Cja-Mir-499 Cli-Mir-499 Cpi-Mir-499 Cpo-Mir-499 Dno-Mir-499 Dre-Mir-499-P1 Dre-Mir-499-P2 Ebu-Mir-499 Eca-Mir-499 Ete-Mir-499 Gga-Mir-499 Gja-Mir-499 Gmo-Mir-499-P1 Laf-Mir-499 Lch-Mir-499 Loc-Mir-499 Mal-Mir-499-P1 Mdo-Mir-499 Mml-Mir-499 Mmr-Mir-499 Mmu-Mir-499 Mun-Mir-499 Oan-Mir-499 Ocu-Mir-499 Pab-Mir-499 Pbv-Mir-499 Pma-Mir-499 Rno-Mir-499 Sha-Mir-499 Spt-Mir-499 Sto-Mir-499 Tgu-Mir-499 Tni-Mir-499-P1 Xla-Mir-499-P3 Xla-Mir-499-P4 Xtr-Mir-499

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr20: 34990408-34990466 [+] UCSC Ensembl

Seed

UAAGACU

Precursor
(pre-Mir +30nt flank)

CCUGUCCCCUGUGCCUUGGGCGGGCGGCUGUUAAGACUUGCAGUGAUGUUUAACUCCUCUCCACGUGAACAUCACAGCAAGUCUGUGCUGCUUCCCGUCCCUACGCUGCCUGGGCAGGG

Get precursor sequence

Structure

        10          20        30        40        50         
CCUGUCCCCUGUGCCUU--|      C   U  UA        A          ACUCCU 
                   GGGCGGG GGC GU  AGACUUGC GUGAUGUUUA      \
                   CCUGCCC UCG CG  UCUGAACG CACUACAAGU      C
GGGACGGGUCCGUCGCAUC^      U   U  UG        A          GCACCU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-499_5p

mirBase accession

MIMAT0002870

Sequence

0- UUAAGACUUGCAGUGAUGUUUA -22

Get sequence

Proposed targets

microrna.org: MIMAT0002870
TargetScanVert: hsa-miR-499a-5p
TargetMiner: hsa-miR-499a-5p
miRDB: MIMAT0002870

Star sequence

Hsa-Mir-499_3p*

mirBase accession

MIMAT0004772

Sequence

37- AACAUCACAGCAAGUCUGUGCU -59

Get sequence

Proposed targets

microrna.org: MIMAT0004772
TargetScanVert: hsa-miR-499a-3p
TargetMiner: hsa-miR-499a-3p
miRDB: MIMAT0004772