MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-499

Family name MIR-499 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-499
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Dre-Mir-499-P2  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Pma-Mir-499  Rno-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xla-Mir-499-P3  Xla-Mir-499-P4  Xtr-Mir-499 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_45: 1799358-1799416 [+] UCSC
Seed UAAGACU
Precursor
(pre-Mir +30nt flank)		 
UGCAUCCCCUGGGCCCUGGGCGGGCGGCUGUUAAGACUUGCAGUGAUGUUUAAUUCCUCUCCACGUGAACAUCACAGCAAGUCUGUGCUGCUUCCCGUCCCCAUGCUGCCUAGGCAGGG
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Structure
        10          20        30        40        50         
UGCAUCCCCUGGGCCCU--|      C   U  UA        A          AUUCCU 
                   GGGCGGG GGC GU  AGACUUGC GUGAUGUUUA      \
                   CCUGCCC UCG CG  UCUGAACG CACUACAAGU      C
GGGACGGAUCCGUCGUACC^      U   U  UG        A          GCACCU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-499_5p
mirBase accessionMIMAT0047297
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
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Star sequence

Cpo-Mir-499_3p*
mirBase accessionMIMAT0047298
Sequence 
37- AACAUCACAGCAAGUCUGUGCU -59
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