MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-199-P3

Family name MIR-199 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-199-3
Paralogues Tni-Mir-199-P1b-v1  Tni-Mir-199-P2a-v1  Tni-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P3-v1  Ami-Mir-199-P3-v1  Bta-Mir-199-P3-v1  Cfa-Mir-199-P3-v1  Cja-Mir-199-P3-v1  Cpi-Mir-199-P3-v1  Cpo-Mir-199-P3-v1  Dre-Mir-199-P3-v1  Eca-Mir-199-P3-v1  Ete-Mir-199-P3-v1  Gja-Mir-199-P3-v1  Gmo-Mir-199-P3-v1  Hsa-Mir-199-P3-v1  Laf-Mir-199-P3-v1  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Mal-Mir-199-P3-v1  Mdo-Mir-199-P3-v1  Mml-Mir-199-P3-v1  Mmr-Mir-199-P3-v1  Mmu-Mir-199-P3-v1  Mun-Mir-199-P3-v1  Neu-Mir-199-P3-v1  Ocu-Mir-199-P3-v1  Pab-Mir-199-P3-v1  Pbv-Mir-199-P3-v1  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 3: 11403070-11403130 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P3-v2)		 Mir-199-P3-v1 3: 11403070-11403130 [-] UCSC Ensembl
Mir-199-P3-v2 3: 11403070-11403130 [-] UCSC Ensembl
Mir-199-P3-v3 3: 11403070-11403130 [-] UCSC Ensembl
Variant

Tni-Mir-199-P3-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
CAGAGUCCUCCUCACUCCCCACCCUGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAGACUCAAGCUGAACAGUAGUCUGCACAUUGGUUAUGCAGAGUUGGGACACACACCUACAACUAC
Get precursor sequence
Structure
        10         20         30        40        50        60
CAGAGUCCUCCUCACUC-   -| C    C  C       U        C      UCAGA 
                  CCC AC CUGC UG CCAGUGU CAGACUAC UGUUCA     C
                  GGG UG GACG AU GGUUACA GUCUGAUG ACAAGU     U
CAUCAACAUCCACACACA   U^ A    U  U       C        -      CGAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-199-P3-v2_5p*
mirBase accessionMIMAT0002960
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
Get sequence
Mature sequence

Tni-Mir-199-P3-v2_3p
mirBase accessionNone
Sequence 
38- AACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Variant

Tni-Mir-199-P3-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
CAGAGUCCUCCUCACUCCCCACCCUGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAGACUCAAGCUGAACAGUAGUCUGCACAUUGGUUAUGCAGAGUUGGGACACACACCUACAACUAC
Get precursor sequence
Structure
        10         20         30        40        50        60
CAGAGUCCUCCUCACUC-   -| C    C  C       U        C     AUCAGA 
                  CCC AC CUGC UG CCAGUGU CAGACUAC UGUUC      C
                  GGG UG GACG AU GGUUACA GUCUGAUG ACAAG      U
CAUCAACAUCCACACACA   U^ A    U  U       C        -     UCGAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-199-P3-v1_5p*
mirBase accessionMIMAT0002960
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Mature sequence

Tni-Mir-199-P3-v1_3p
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Variant

Tni-Mir-199-P3-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
CAGAGUCCUCCUCACUCCCCACCCUGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAGACUCAAGCUGAACAGUAGUCUGCACAUUGGUUAUGCAGAGUUGGGACACACACCUACAACUAC
Get precursor sequence
Structure
        10         20         30        40        50        60
CAGAGUCCUCCUCACUC-   -| C    C  C       U        C    CAUCAGA 
                  CCC AC CUGC UG CCAGUGU CAGACUAC UGUU       C
                  GGG UG GACG AU GGUUACA GUCUGAUG ACAA       U
CAUCAACAUCCACACACA   U^ A    U  U       C        -    GUCGAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-199-P3-v3_5p*
mirBase accessionMIMAT0002960
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
Get sequence
Mature sequence

Tni-Mir-199-P3-v3_3p
mirBase accessionNone
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence