Mir-21

MirGeneDB ID

Pma-Mir-21

Family name

MIR-21 (all species)

Seed

AGCUUAU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-21 Ami-Mir-21 Bta-Mir-21 Cfa-Mir-21 Cli-Mir-21 Cmi-Mir-21 Cpi-Mir-21 Cpo-Mir-21 Dno-Mir-21 Dre-Mir-21-P1 Dre-Mir-21-P2 Ebu-Mir-21 Ete-Mir-21 Gga-Mir-21 Gja-Mir-21 Gmo-Mir-21-P1 Gmo-Mir-21-P2 Hsa-Mir-21 Lch-Mir-21 Loc-Mir-21 Mal-Mir-21-P1 Mal-Mir-21-P2 Mdo-Mir-21 Mml-Mir-21 Mmu-Mir-21 Mun-Mir-21 Oan-Mir-21 Ocu-Mir-21 Pbv-Mir-21 Rno-Mir-21 Sha-Mir-21 Spt-Mir-21 Sto-Mir-21 Tgu-Mir-21 Tni-Mir-21-P1 Tni-Mir-21-P2 Xla-Mir-21-P3 Xla-Mir-21-P4 Xtr-Mir-21

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046073.1: 17425919-17425985 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGAGUUGGUGUCAGUGUCUCGUGCGCGUUAGCUUAUCAGACUGGUGUUUGCUGUGGCACGCGCUAUCCCUGAGCAACAACAGUCGAUAAGCUGGCACGCGCGGGGCCCCAUCGGACACGUGGCCA

Get precursor sequence

Structure

        10          20        30        40        50        60    
GUGGAGUUGGUGUCAGU--|         C           A     G    U   GUGGCACGC 
                   GUCUCGUGCG GUUAGCUUAUC GACUG UGUU GCU         \
                   CGGGGCGCGC CGGUCGAAUAG CUGAC ACAA CGA         G
ACCGGUGCACAGGCUACCC^         A           -     A    -   GUCCCUAUC 
     120       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-21_5p

mirBase accession

None

Sequence

0- UAGCUUAUCAGACUGGUGUUUGCU -24

Get sequence

Star sequence

Pma-Mir-21_3p*

mirBase accession

None

Sequence

45- CAACAACAGUCGAUAAGCUGGC -67

Get sequence