MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-21

Family name MIR-21 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cja-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P1  Dre-Mir-21-P2  Ebu-Mir-21  Eca-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Gmo-Mir-21-P1  Gmo-Mir-21-P2  Hsa-Mir-21  Laf-Mir-21  Lch-Mir-21  Loc-Mir-21  Mal-Mir-21-P1  Mal-Mir-21-P2  Mdo-Mir-21  Mml-Mir-21  Mmr-Mir-21  Mmu-Mir-21  Mun-Mir-21  Neu-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pab-Mir-21  Pbv-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Tni-Mir-21-P1  Tni-Mir-21-P2  Xla-Mir-21-P3  Xla-Mir-21-P4  Xtr-Mir-21 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046073.1: 17425919-17425985 [+] UCSC Ensembl
Seed AGCUUAU
Precursor
(pre-Mir +30nt flank)		 
GUGGAGUUGGUGUCAGUGUCUCGUGCGCGUUAGCUUAUCAGACUGGUGUUUGCUGUGGCACGCGCUAUCCCUGAGCAACAACAGUCGAUAAGCUGGCACGCGCGGGGCCCCAUCGGACACGUGGCCA
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Structure
        10          20        30        40        50        60    
GUGGAGUUGGUGUCAGU--|         C           A     G    U   GUGGCACGC 
                   GUCUCGUGCG GUUAGCUUAUC GACUG UGUU GCU         \
                   CGGGGCGCGC CGGUCGAAUAG CUGAC ACAA CGA         G
ACCGGUGCACAGGCUACCC^         A           -     A    -   GUCCCUAUC 
     120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-21_5p
mirBase accessionNone
Sequence 
0- UAGCUUAUCAGACUGGUGUUUGCU -24
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Star sequence

Pma-Mir-21_3p*
mirBase accessionNone
Sequence 
45- CAACAACAGUCGAUAAGCUGGC -67
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