MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-21

Family name MIR-21 (all species)
Seed AGCUUAU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P1  Dre-Mir-21-P2  Ebu-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Gmo-Mir-21-P1  Gmo-Mir-21-P2  Hsa-Mir-21  Lch-Mir-21  Mal-Mir-21-P1  Mal-Mir-21-P2  Mdo-Mir-21  Mml-Mir-21  Mmu-Mir-21  Mun-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Tni-Mir-21-P1  Tni-Mir-21-P2  Xla-Mir-21-P3  Xla-Mir-21-P4  Xtr-Mir-21 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG22: 4637220-4637279 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUAAUCCAUCACUCUACCAUCCUGUCAGAUAGCUUAUCAGACUGGUGUUGGCUGUUACAUCACAAGGCGACAACAGUCUGUAGGCUGUCUGACAUUUUGGGGUCUUUCAUCAGACCAGC
Get precursor sequence
Structure
        10          20        30        40        50          
CAUAAUCCAUCACUCUA--|  UCC              U       G     G UGUUAC 
                   CCA   UGUCAGAUAGCUUA CAGACUG UGUUG C      \
                   GGU   ACAGUCUGUCGGAU GUCUGAC ACAGC G      A
CGACCAGACUACUUUCUGG^  UUU              -       A     G AACACU 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-21_5p
mirBase accessionNone
Sequence 
0- UAGCUUAUCAGACUGGUGUUGGC -23
Get sequence
Star sequence

Loc-Mir-21_3p*
mirBase accessionNone
Sequence 
38- CGACAACAGUCUGUAGGCUGUC -60
Get sequence