MirGeneDB ID | Mdo-Mir-21 |
Family name |
MIR-21 (all species) |
Seed |
AGCUUAU |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-21
|
Paralogues |
|
Orthologues |
Aca-Mir-21
Ami-Mir-21
Bta-Mir-21
Cfa-Mir-21
Cli-Mir-21
Cmi-Mir-21
Cpi-Mir-21
Cpo-Mir-21
Dno-Mir-21
Dre-Mir-21-P1
Dre-Mir-21-P2
Ebu-Mir-21
Ete-Mir-21
Gga-Mir-21
Gja-Mir-21
Gmo-Mir-21-P1
Gmo-Mir-21-P2
Hsa-Mir-21
Lch-Mir-21
Loc-Mir-21
Mal-Mir-21-P1
Mal-Mir-21-P2
Mml-Mir-21
Mmu-Mir-21
Mun-Mir-21
Oan-Mir-21
Ocu-Mir-21
Pbv-Mir-21
Pma-Mir-21
Rno-Mir-21
Sha-Mir-21
Spt-Mir-21
Sto-Mir-21
Tgu-Mir-21
Tni-Mir-21-P1
Tni-Mir-21-P2
Xla-Mir-21-P3
Xla-Mir-21-P4
Xtr-Mir-21
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (monDom5_add) |
2: 172169927-172169986 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAUCUCCAUGGCUGUACCGUCCUGUCGGAUAGCUUAUCAGACUGAUGUUGACUGUUGGAUCUCAUGGCAACAGCAGUCGAUGAGCUGUCUGACAUUUUGGUAUCUUUCAUCUGACCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAUCUCCAUGGCUGUA--| UCC A A A UGUUGG
CCG UGUCGGAUAGCUUAUC GACUG UGUUG C A
GGU ACAGUCUGUCGAGUAG CUGAC ACAAC G U
CUACCAGUCUACUUUCUAU^ UUU - G - GUACUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Mdo-Mir-21_5p |
mirBase accession | MIMAT0004091 |
Sequence |
0- UAGCUUAUCAGACUGAUGUUGAC -23
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-21-5p
|
Star sequence |
Mdo-Mir-21_3p* |
mirBase accession | MIMAT0026650 |
Sequence |
38- CAACAGCAGUCGAUGAGCUGUC -60
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-21-3p
|